Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1896 ATGGAACAGAAAAACGTTTTGTTATCGGCGTTGAGTGTTGGGGTGGGAGTTGGAGTGGGAATTGGTTTGGCTGGAAAAGGCGTTACAAAATGGGGTGCTAATGAATATTCATCCTCAAACGGCGTTACTCCGGAGAACATGGAGCGCGAAATGCAACGACTAGTTGTCGATGGCAGAGAAAGCAAGGTCACTTTTGATCAATTCCCTTATTATCTCAGAGAGCAGACACGGGTATTGCTAACAAGTGCTGCCTATGTCCATTTGAAGCATGCGGAGGTTTCTAGGTATACACGGAATCTTGCTCCTGCAAGCCGGACTATTCTGCTTTCAGGGCCAGCAGAACTTTACCAACAAGTGCTTGCCAAGGCTTTAGCTCACTACTTTGAGGCAAAGTTGCTTCTGTTAGATTTAACTGATTTTTCACTGAAGATTCAGAGTAGATATGGTTCTGCCAACAAAGAATCTTCTTTCAAAAGGTCTACCTCGGAGACAACTTTGGAGCGGCTATCTGACCTATTTGGGTCATTTTCAATCTTTCAACAGAGGGAAGTGCCTAAAGGCAATTTCCACAGGCAGTGCAGTGGCGTTGACCTACGGTCATTGCAGGCTGAAGGATCTAGTAACCCTCCTAAGATGCGTAGGAATGCATCAGCTTCTGCAAATATCAGTAGCCTTGCTTCACAAAGCAATCCTACAAATTCAGCTCCTCAGAAGCACATAACCAGCTGGCCTTTTGATGAGAAGCTTCTCATACAGACTCTTTATAAGGTTCTAGTTTATGTGTCAAAAACCTATCCCATTGTTCTATACTTGCGGGATGTTGACAATTTGTTGAATAGATCACAAAGGATATATAACCTATTCCAGACAATGCTGAATAAACTACATGGACCAATTTTGATTCTTGGTTCACGAGTTCTGGATTCTGGTAGTGACTACAAAGAAGTGAATGAGAGACTTGCTTCCCTCTTCCCCTACAACATAGAAATCAGCCCCCCAGAAGATGAATCTTGTCTTATGAGCTGGAAGTCTCAATTTGAAGAGGACATGAAGAAGATACAGATTCAGGATAACAGGAACCATATCATGGAAGTGCTTGCAGCCAATGATCTTGATTGTGATGACCTGGATTCCATCTGTGTGGCAGATACAGTGGTTCTCAGTAACTATATCGAAGAGATTGTCGTGTCTGCAATTTCTTATTATTTAATGAATAGCAAAGATCCTGAATACAGAAATGGAAAATTGGTTATTCCATGCAATAGTTTGTCCCATGCATTGGGTATATTCCAGGAGGGGAAATTCAGTGTCAGAGATACATTAAAATTAGAAGCCCAAGCAGTCACGTCTCAGAGAGAAGAAGGAGCTCTTGTGGAACCAGAAAAAAAGGCAGAAAATCCTGCTTCTGATATAAAGGCAGAATCAGATACATCATCAACTTCAGTGGTAAAAACTGATGGTGAAAATGCAGTTCCTGAATCCAAAGTTGAAGTTCCCCCCGACAATGAGTTTGAGAAGCGAATAAGGCCTGAGGTAATACCAGCAAACGAGATTGGTGTGAAATTCTCAGATGTTGGTGCCTTAGATGAGACCAAAGAGTCGCTTCAAGAACTAGTTATGCTTCCTCTTCGAAGGCCGGACCTTTTCCGGGGAGGCCTTCTAAAGCCTTGTAAAGGAATATTGCTATTTGGGCCTCCTGGCACCGGGAAGACAATGCTGGCAAAGGCCATTGCGAGCGAATCTGGCGCAAGTTTCATTAATGTATCCATGTCTACCGTCACCTCCAAATGGTTTGGTGAAGATGAGAAGAATGTTCGTGCTTTATTCACACTGGCCGCCAAGGTCTCCCCAACTATTATATTTGTTGATGAGGTGGATAGTATGCTAGGACAGCGGACCAGAGTTGGAGAGCATGAAGCCATGCGGAAAATAAAGAATGAGTTTATGACTCATTGGGATGGACTTATGACAAATTCGGGGGAGCGCATCCTTGTTCTTGCTGCAACCAATAGGCCATTTGACCTCGATGAAGCAATAATTAGGAGATTTGAAAGGAGAATTATGGTAGGGATGCCATCTGTGGAGAACAGGGAAAAGATTTTGAGGACTCTTTTGGCAAAAGAGAAGGTGGATGAGAAACTTGATTTTAAGGAAGTCGCAACTATGGCCGAAGGATATAGCGGAAGTGATCTCAAGAACTTGTGCACAACTGCTGCTTACAGGCCTGTTAGAGAGTTAATTCAACAAGAGAGGCTAAAGACTCTGGAGAAAAAGCAGCAGGGTGCTGGAGGACAGAATAACGATGTCCAAGACGCTCTGGATACAGAAGAGGAAGTTCAACAAGAAAGAGTTATTACCCTTAGACCTTTGAACATGCAGGACTTCAAAGAGGCTAAGAGTCAGGTTGCCGCAAGCTACGCAGCTGAGGGGGCAGGAATGAATGAGTTAAAGCAGTGGAATGAATTGTATGGGGAAGGCGGTTCAAGGAAGCAACAACAGTTATCATATTTCCTATAA 2517 0.4338 MEQKNVLLSALSVGVGVGVGIGLAGKGVTKWGANEYSSSNGVTPENMEREMQRLVVDGRESKVTFDQFPYYLREQTRVLLTSAAYVHLKHAEVSRYTRNLAPASRTILLSGPAELYQQVLAKALAHYFEAKLLLLDLTDFSLKIQSRYGSANKESSFKRSTSETTLERLSDLFGSFSIFQQREVPKGNFHRQCSGVDLRSLQAEGSSNPPKMRRNASASANISSLASQSNPTNSAPQKHITSWPFDEKLLIQTLYKVLVYVSKTYPIVLYLRDVDNLLNRSQRIYNLFQTMLNKLHGPILILGSRVLDSGSDYKEVNERLASLFPYNIEISPPEDESCLMSWKSQFEEDMKKIQIQDNRNHIMEVLAANDLDCDDLDSICVADTVVLSNYIEEIVVSAISYYLMNSKDPEYRNGKLVIPCNSLSHALGIFQEGKFSVRDTLKLEAQAVTSQREEGALVEPEKKAENPASDIKAESDTSSTSVVKTDGENAVPESKVEVPPDNEFEKRIRPEVIPANEIGVKFSDVGALDETKESLQELVMLPLRRPDLFRGGLLKPCKGILLFGPPGTGKTMLAKAIASESGASFINVSMSTVTSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLMTNSGERILVLAATNRPFDLDEAIIRRFERRIMVGMPSVENREKILRTLLAKEKVDEKLDFKEVATMAEGYSGSDLKNLCTTAAYRPVRELIQQERLKTLEKKQQGAGGQNNDVQDALDTEEEVQQERVITLRPLNMQDFKEAKSQVAASYAAEGAGMNELKQWNELYGEGGSRKQQQLSYFL* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1896 838 MobiDBLite consensus disorder prediction 449 501 - -
Gso1g1896 838 Gene3D - 519 781 IPR027417 -
Gso1g1896 838 MobiDBLite consensus disorder prediction 455 470 - -
Gso1g1896 838 MobiDBLite consensus disorder prediction 201 238 - -
Gso1g1896 838 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 838 - -
Gso1g1896 838 ProSitePatterns AAA-protein family signature. 663 682 IPR003960 GO:0005524|GO:0016887
Gso1g1896 838 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 838 - -
Gso1g1896 838 Pfam AAA+ lid domain 714 755 IPR041569 -
Gso1g1896 838 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 520 759 IPR027417 -
Gso1g1896 838 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 367 IPR027417 -
Gso1g1896 838 Pfam ATPase family associated with various cellular activities (AAA) 560 690 IPR003959 GO:0005524|GO:0016887
Gso1g1896 838 Gene3D - 692 774 - -
Gso1g1896 838 SMART AAA_5 556 693 IPR003593 -
Gso1g1896 838 MobiDBLite consensus disorder prediction 471 487 - -
Gso1g1896 838 CDD AAA 558 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1896 Gso-Chr1 55683807 55690301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1896 468 752 Calmodulin-binding Proteins AT3G56690 34.130 1.89e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1896 - - gmx:100808011 1592.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1896 1 55683807 55690301 Gso1g1896 1 55683807 55690301 ECH