Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1888 ATGGCTACGGCGCTGGAGAAGAAAGCGAAGGAGGCATTCTTCGACGACGAATTCGGTCTGGCCGTCGATCTCTACTCTGAAGCCATACGATTGGATCCGAACGACGCCAATCTCTTCGCGGACAGAGCCCAAGCCCATATCAAACTCAACGCTTTCACTGAAGCCGTTTCCGATGCCAACAAATCCATCCAATTAAACCCTTCCTTGCCCAAGGCCTATCTTCGTAAAGCCACCGCTTGTATCAAACTCCAAGAATATCACACCGCCAAGGTAGCGCTTCAAAACGGTGCCGCTTTTGCCCAAGACGATTCAAGATTCGCCAACTTGATTCAACAATGTGATCGCTGCATTGCAGAGGAATCAAGTGGCCTTACTAGCACCTTGTCTTCCCATTTGAGCAATAGAAATCATGGGATGACTAAAGAAGAAGCTGAAGGAGACAGTTTGCTTTCCCAAAAGAATGAAGCCACACTAAACAGACCAAAATACAGGCATGAATACTACCAGAAGCCAGAAGAAGTGGTTGTGACAATATTTGCAAAAGGAATATCAGCAAAAGATGTGGTTGTTGACTTTGGTGAACAGATTCTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTATCAACCTCGATTGTTTGGAAAGATCATTCCCAACAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAATCCGTCTTGCAAAAGCTGAAGCTATTAATTGGACATCTCTGGAATATGGCAAGAATACACTTCCCCCAATAATAAATAGGCCGATAGTTCAATCTGAAAGGGCTTCATACCCATCACCAAAACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTCCCCCAGAAGGTATGGAGTTGAAAAAATGGGAGTATTGA 1086 0.4365 MATALEKKAKEAFFDDEFGLAVDLYSEAIRLDPNDANLFADRAQAHIKLNAFTEAVSDANKSIQLNPSLPKAYLRKATACIKLQEYHTAKVALQNGAAFAQDDSRFANLIQQCDRCIAEESSGLTSTLSSHLSNRNHGMTKEEAEGDSLLSQKNEATLNRPKYRHEYYQKPEEVVVTIFAKGISAKDVVVDFGEQILSVTIDVPGQDAYHYQPRLFGKIIPNNCRVEVLSTKIEIRLAKAEAINWTSLEYGKNTLPPIINRPIVQSERASYPSPKPRTKDWDKLEAQVKKEEKEEKLDGDAALNKLFRDIYQNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVEGSPPEGMELKKWEY* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1888 361 ProSiteProfiles SGS domain profile. 270 361 IPR007699 -
Gso1g1888 361 SUPERFAMILY HSP20-like chaperones 150 259 IPR008978 -
Gso1g1888 361 Pfam SGS domain 279 359 IPR007699 -
Gso1g1888 361 MobiDBLite consensus disorder prediction 341 361 - -
Gso1g1888 361 SMART tpr_5 2 35 IPR019734 GO:0005515
Gso1g1888 361 SMART tpr_5 36 69 IPR019734 GO:0005515
Gso1g1888 361 SMART tpr_5 70 103 IPR019734 GO:0005515
Gso1g1888 361 SUPERFAMILY TPR-like 3 113 IPR011990 GO:0005515
Gso1g1888 361 Pfam CS domain 164 239 IPR007052 -
Gso1g1888 361 Gene3D Tetratricopeptide repeat domain 1 132 IPR011990 GO:0005515
Gso1g1888 361 PANTHER PROTEIN SGT1 HOMOLOG A 1 361 - -
Gso1g1888 361 ProSiteProfiles CS domain profile. 160 249 IPR007052 -
Gso1g1888 361 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Gso1g1888 361 PANTHER PROTEIN SGT1 HOMOLOG 1 361 IPR044563 GO:0051087
Gso1g1888 361 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Gso1g1888 361 MobiDBLite consensus disorder prediction 127 154 - -
Gso1g1888 361 Gene3D - 161 252 IPR008978 -
Gso1g1888 361 CDD p23_CS_SGT1_like 166 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1888 Gso-Chr1 55611936 55616014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1888 1 108 U-box Gene Family AT3G07370 32.407 1.84e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1888 K12795 - gmx:100194420 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1888 1 55611936 55616014 Gso1g1888 1 55611936 55616014 ECH