Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1887 ATGGATTGGGATTTGCAAGCTATTGTGGGATGCACCAAAGCCCCTGCAGCCACCGTGATGGACAACCCGCATCTCATTTTTTCTCAACATTTCTGTCCTGAAGAACAAGATGACCTACTTTGCAATTTTCAGGAATTCTCAGAAACCACAACGGTGGTTGATGAATTAGAAGAGCTTTACAAACCTTCCTACCCTCGTCATGTTCATGACAACCCTCTTCCCGTCGTTGCAAATTCCCCACCTATCCTCGATGAAAAAGTCAAAGAACTCAAACCATCAGACAAAACAGCATCTAGATGTAAAAAAAGCAAGAAGCGGCAGAAGAATAAGAGGGTGGTGACAGCTGCAGATGGTGTTTCGGACCCATGGGCATGGCGTAAATATGGGCAGAAACCAATAAAGGGGTCACCTTATCCTCGTAGCTATTATAGATGTAGCAGCTCCAAAGGGTGCTTAGCTAGGAAACACGTGGAACGGAGTCATTTGGATCCTGGAGTTTTCATAGTTACCTACACTGCAGAACACAGCGATCCTCACCCTACATGCAAAAACTCACAACAAAGAAAGAACAGTTCCACAATTCCACTTCCAACTACAAGAACTCGGGATGATCAACACACATTAATACCTGTGGTGGCGGAGGCTATCGAAGATGAGCATGAAGAAATTAAGGAGCTTAAGAAAGAGGAAGATTTTGTAGAAGGTGTTGGTTTCCAAGCATCGAAGTTGAGGAACTAA 738 0.4417 MDWDLQAIVGCTKAPAATVMDNPHLIFSQHFCPEEQDDLLCNFQEFSETTTVVDELEELYKPSYPRHVHDNPLPVVANSPPILDEKVKELKPSDKTASRCKKSKKRQKNKRVVTAADGVSDPWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKHVERSHLDPGVFIVTYTAEHSDPHPTCKNSQQRKNSSTIPLPTTRTRDDQHTLIPVVAEAIEDEHEEIKELKKEEDFVEGVGFQASKLRN* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1887 245 Gene3D WRKY domain 92 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso1g1887 245 Coils Coil 216 236 - -
Gso1g1887 245 MobiDBLite consensus disorder prediction 177 206 - -
Gso1g1887 245 PANTHER WRKY TRANSCRIPTION FACTOR 63-RELATED 2 235 - -
Gso1g1887 245 MobiDBLite consensus disorder prediction 92 113 - -
Gso1g1887 245 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 2 235 IPR044810 GO:0003700
Gso1g1887 245 MobiDBLite consensus disorder prediction 177 205 - -
Gso1g1887 245 Pfam WRKY DNA -binding domain 121 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g1887 245 ProSiteProfiles WRKY domain profile. 114 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g1887 245 SMART WRKY_cls 119 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso1g1887 245 SUPERFAMILY WRKY DNA-binding domain 115 180 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1887 Gso-Chr1 55605298 55606447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1887 2 233 WRKY Transcription Factor Family AT4G01250 38.976 1.17e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso1g1887 WRKY 2.4e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1887 K13426 - gmx:102667019 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1887 1 55605298 55606447 Gso1g1887 1 55605298 55606447 ECH
Gso1g1887 1 55605298 55606447 Gso10g2057 10 47580193 47582123 ECH