Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1886 ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAGAGAGGCCTTTGGTCCCCCGAGGAAGATGAGAAGCTCATCAGATACATTACCACTCACGGCTATGGTTGCTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGTAAGAGTTGTCGCCTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGCAGGTTTACACCTGAAGAGGAGAAGTTAATTATAAGTCTTCATGGGGTCGTTGGCAACAGATGGGCTCACATTGCAAGCCACTTACCAGGTAGAACTGACAACGAAATAAAGAACTACTGGAATTCTTGGATCAAAAAGAAAATTAGAAAGCCTTCTTCGGTGACTTCATCAATGACCACTACACAAAGTGTTGATCATCACCACCCCCAGTTCAATTATAATTCCAATCAACTAGATCACTATGGCCACCAAGAAAATTTAACAGCAAAGCCACCGATGCAAGAAACCTTATTTTCCTCGACGTGCCCCCTATTTATGTTTGACACTAGTTCATTAGATCAAGGGACAACAACAGTAGACACCACCACCAATGTACGAACAGAATTGTTCCAAGATTCATTGGGTTTGAGCAGTACTGAAACGTGGAACTTGAGCCACCATCAAGTCCATGTTCTTCCTCCTCAACTAGCAGCAACTTTTACAGCAGCAACAGTTATTGATACCACGAATTATCTGCCACCATTGATAGAGAACGTGGACAACATGGTGCCAAATATGGAAGTACAGTCTTGTAGTATAGACGAGGAAGGAGAAATGGCACTAGAGTGTCTACGGAGACAAGGTTTGAATGAGTGGGTGGAGCATCAACAACAATGTCCCAACTTTCTTTTCTGGGACAGTATTAATGTAGAAGGACAACTTGGAGGGGAAGAACTAGCACCAAACACGTCAAATATGGGAAACAATACACTTTCACCTTTTCCATCCTCTTTAAAAGCAGAAATAGAATTAGGGTTTATATCGCGCATAGTGTGGTACCAGCAGCAGAGCTTGTATACGTCGCCGCTTCAGCGTAGCAACATGATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCGAAGCACCCGGAGATTGATGTGCCGAATCTGCAGGTGATAAAGCTGATGCAGAGCTTCAAATCCAGAGAGTACGTGAGGGAAACATTTGCGTGGATGCACTATTACTGGTTCCTCACCAACGATGGAATTGAGTTCCTTAGGACTTACCTCAACCTTCCATCCGAAATTGTCCCTGCCACTCTCAAGAAGCAGGCCAAGCCCGCCGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGCGGTGACCGTGATGGATACCGTGGAGGTCCACGCGGACCTGGCGGTGATTTCGGTGACAAGGGTGGAGCTCCTGCTGACTACAGGCCTTCTTTTGGGGGTGGTCCTGGCGGAAGGCCTGGCTTCGGTCGTGGTTCCGGTGGTTATGGGGCACCGACTAGTTCAAACATTCCTTCTTAA 1611 0.4705 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSSVTSSMTTTQSVDHHHPQFNYNSNQLDHYGHQENLTAKPPMQETLFSSTCPLFMFDTSSLDQGTTTVDTTTNVRTELFQDSLGLSSTETWNLSHHQVHVLPPQLAATFTAATVIDTTNYLPPLIENVDNMVPNMEVQSCSIDEEGEMALECLRRQGLNEWVEHQQQCPNFLFWDSINVEGQLGGEELAPNTSNMGNNTLSPFPSSLKAEIELGFISRIVWYQQQSLYTSPLQRSNMIIPEKNRKEICKYLFQEGVCFAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGGPGGRPGFGRGSGGYGAPTSSNIPS* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1886 536 Gene3D - 356 459 IPR036388 -
Gso1g1886 536 MobiDBLite consensus disorder prediction 446 536 - -
Gso1g1886 536 CDD SANT 69 112 IPR001005 -
Gso1g1886 536 PANTHER 40S RIBOSOMAL PROTEIN S10-1-LIKE 274 534 - -
Gso1g1886 536 Gene3D - 68 140 - -
Gso1g1886 536 CDD SANT 17 61 IPR001005 -
Gso1g1886 536 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso1g1886 536 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso1g1886 536 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso1g1886 536 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso1g1886 536 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso1g1886 536 Gene3D - 6 66 - -
Gso1g1886 536 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gso1g1886 536 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso1g1886 536 PANTHER 40S RIBOSOMAL PROTEIN S10 274 534 IPR037447 -
Gso1g1886 536 SMART sant 13 63 IPR001005 -
Gso1g1886 536 SMART sant 66 114 IPR001005 -
Gso1g1886 536 Pfam Plectin/S10 domain 358 449 IPR005326 -
Gso1g1886 536 MobiDBLite consensus disorder prediction 467 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1886 Gso-Chr1 55589045 55595234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1886 1 300 MYB Transcription Factor Family AT1G63910 53.693 3.09e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso1g1886 S10_plectin 9.3e-43 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1886 K09422 K02947 gmx:100803556 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1886 1 55589045 55595234 Gso1g1886 1 55589045 55595234 ECH