Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1880 ATGGCTCGACAACCTTGTGATGACAAATCATCATCTGGATTCTGCTACTCTGATGTGTCATCGGGAAATCCAACGATGTTGGTGAATCAGATCCAAGGCTTTGTGTCAGACCCGGAGATGTACAACCTAACCACAGGCATGGAAATGATAGGGTTTCCAAAGAGTGACACCAACGCTGTCATGTGGAGAAGTTTCATCCCCAAACCGGGTCCTTCCTCTTCCAAAACCATCAACGATAATTCCACAACTTTCTACCACCACGACTACAACAACAAGCATGCAGATTTCACACCAGCTGGGAATATTTCTCAAACAAGTGCCGATAATCTAATCGTGGGAAGTCATGATTCAGCCTCGTGGCAAGACAACATCAACAACAACAATAACAGCAGCAGGTTTGATGATTCTTCTCTAAGGTGTGTGTTTCCTTGTGAAACCAACGAAAGGCCTAGCCAAGGTCTTTCACTCTCTCTTAGTTCAACCAACCCTTCCTCTATCGGGTTGCAATCTTTTGAGCTAAGACAAACAGGCCAACATCTTGATTTTGTTTCGTCGAGTTCCAGAGATGGGTTCTTTGGAAAACCAGTTTCTCTTCAACAGCAACAGATGGTATCACAAGATGGGTATGTGAGTTCTAATTCTAAAGTTGCAAGCGTTTATCAACAAGGACATTTCCTGGTGAAGAACTCCAAGTTCTTGGTGCCTGCACAAGACCTTCTCAACGAGTTTTGTAGCCTTGACGCAAAGCAAAGCGACTTGGGAAAGCCAACAAAATCGTTGAATAAGAAGCAGTGGGAAGAGGAAAATAACGGTATCGGTTCCTCGAAGAAGCATTCTCTGACCTCTCTAGAGTTCGTGGAGTTGCAGAAGAGAAAGACAAAGCTGCTTTCGATGCTGGAAGAGGTTGACAGAAGGTACAAGCACTACCGCAATCAGATGAAGAGCGTGGTGTCGTCGTTCGAAGCGGTGGCGGGGAATGGTGCTGCCACGGTGTACTCAGCTTTGGCGTTGAAAGCCATGTCGAGACATTTCAGGTGTTTGAAGGATGGGATTATGGCGCAGATTCAAGCAACAAGAAAAGCCATGGGAGAGAAAGACCCAGTTGCACCAGGCACAACAAGGGGCGAAACGCCAAGGCTCAAAGTTATTGACCAAACACTGAGGCAACAAAGGGCGTTTCAGCAAATGAGCATGATGGAAACCCATCCTTGGAGACCCCAACGTGGCCTTCCTGAGCGAGCTGTTTCAGTTCTTCGGGCTTGGCTCTTTGAGCATTTTCTCCATCCGTACCCAAGCGATGTTGATAAACATATTTTAGCACGCCAAACCGGTCTCTCGAGAGGACAGGTTTCGAATTGGTTTATTAATGCAAGGGTGAGACTATGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAAGTGAAGGACCCTGAAAACAACATAGCTTCCTCAGAAGGGGCTACTGATCAAGACAATGATATAAACCCAAATAATGTTGAATACCCTCCACCTCCTTCTTCATCACGATCAGAGGATCAGAAGCCATCTCTGGTTCGAATTGACTCCGAGTGTGCATCCTCCATCATCAACAACCACAGTACCCCAGATAACAAAAACGACCCAAAGGGCCACGAACAGTGCTTTGGGTCAGTGGAGCTTGATTTTTCATCATACACACACCACTCCTCGGGTATAGTTTCTTACGGAAGTAATGATCAGAATGGGAACAACAACCAGAGTGGGGTGTCTTTGACGCTAGGGTTACAGCAACATGGGGTGAGCCTAGCGTTCCCGCCAGCAACACAGAGTTCACTGTACTATCCAAGGGACCAAATTGAAGATTGTCAACCAGTTCAGTACTCTCTTTTCGATGGTGAAGGACAAAACCTGCCTTACAGGAATTTGATGGGAGCACAGCTTCTACATGACTTGGCAGGGTAG 1941 0.4647 MARQPCDDKSSSGFCYSDVSSGNPTMLVNQIQGFVSDPEMYNLTTGMEMIGFPKSDTNAVMWRSFIPKPGPSSSKTINDNSTTFYHHDYNNKHADFTPAGNISQTSADNLIVGSHDSASWQDNINNNNNSSRFDDSSLRCVFPCETNERPSQGLSLSLSSTNPSSIGLQSFELRQTGQHLDFVSSSSRDGFFGKPVSLQQQQMVSQDGYVSSNSKVASVYQQGHFLVKNSKFLVPAQDLLNEFCSLDAKQSDLGKPTKSLNKKQWEEENNGIGSSKKHSLTSLEFVELQKRKTKLLSMLEEVDRRYKHYRNQMKSVVSSFEAVAGNGAATVYSALALKAMSRHFRCLKDGIMAQIQATRKAMGEKDPVAPGTTRGETPRLKVIDQTLRQQRAFQQMSMMETHPWRPQRGLPERAVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRGQVSNWFINARVRLWKPMVEEMYLEEVKDPENNIASSEGATDQDNDINPNNVEYPPPPSSSRSEDQKPSLVRIDSECASSIINNHSTPDNKNDPKGHEQCFGSVELDFSSYTHHSSGIVSYGSNDQNGNNNQSGVSLTLGLQQHGVSLAFPPATQSSLYYPRDQIEDCQPVQYSLFDGEGQNLPYRNLMGAQLLHDLAG* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1880 646 Gene3D - 407 469 - -
Gso1g1880 646 SMART prehox3 221 353 IPR006563 -
Gso1g1880 646 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 9 605 - -
Gso1g1880 646 ProSiteProfiles 'Homeobox' domain profile. 401 464 IPR001356 GO:0003677
Gso1g1880 646 MobiDBLite consensus disorder prediction 480 517 - -
Gso1g1880 646 Pfam Associated with HOX 227 351 IPR006563 -
Gso1g1880 646 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 9 605 - -
Gso1g1880 646 SUPERFAMILY Homeodomain-like 405 471 IPR009057 -
Gso1g1880 646 SMART HOX_1 404 468 IPR001356 GO:0003677
Gso1g1880 646 Pfam Homeobox KN domain 421 460 IPR008422 GO:0003677|GO:0006355
Gso1g1880 646 MobiDBLite consensus disorder prediction 481 497 - -
Gso1g1880 646 CDD homeodomain 404 465 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1880 Gso-Chr1 55537713 55542323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1880 86 645 Homeobox Transcription Factor Family AT5G41410 45.955 7.32e-142 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso1g1880 POX 9.4e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1880 - - gmx:100800542 1273.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1880 1 55537713 55542323 Gso1g1880 1 55537713 55542323 ECH