Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1878 ATGGGATTTCCAGTGGGGTACACAGAATTGGTGATGCCCAAGGTGTTTCTGCAGGTGCTATCGGTATTGGGGTTCATCAGGAGACTCATCACAATCCTCTTGTGCTACATGGGCTTCCACGATTTCTTCGAATCCGACATTGCGGGGCCGGAGAGGGCGGTGTCGGCGGTGCTGATGAGGGAAATCCTGCCGGTGGTGAAGTTCTCGGAGATGGAGATGGCGGTGGAGGCGGCGGAGAGCTGCGCGGTGTGCCTGTACGAGTTCGAGGGAGAGGACGAGATCAGACGGCTGACGAACTGTCGCCACATATTCCACAGAGGGTGTCTGGACCGTTGGATGGGGTACGATCAAAGAACGTGCCCCCTGTGTCGGACACCCTTCATACCCCACCATATGCAAGCTGCATTCTATTACAATCATCACTAG 426 0.5563 MGFPVGYTELVMPKVFLQVLSVLGFIRRLITILLCYMGFHDFFESDIAGPERAVSAVLMREILPVVKFSEMEMAVEAAESCAVCLYEFEGEDEIRRLTNCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPHHMQAAFYYNHH* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1878 141 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 134 - -
Gso1g1878 141 SMART ring_2 81 123 IPR001841 -
Gso1g1878 141 CDD RING-H2 81 124 - -
Gso1g1878 141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 129 IPR013083 -
Gso1g1878 141 Pfam Ring finger domain 80 124 IPR001841 -
Gso1g1878 141 ProSiteProfiles Zinc finger RING-type profile. 81 124 IPR001841 -
Gso1g1878 141 SUPERFAMILY RING/U-box 67 130 - -
Gso1g1878 141 PANTHER BRH1 RING FINGER PROTEIN 1 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1878 Gso-Chr1 55508740 55509370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1878 1 136 C3H Transcription Factor Family AT1G63840 55.034 2.52e-53 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1878 K16281 - gmx:100799478 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1878 1 55508740 55509370 Gso1g1878 1 55508740 55509370 ECH