Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1873 ATGTCATCATGGTGGAAAAAGTCTTCATCCAAAGATGTAAAAAGGAAAGAAAAAAGGAAAAGTATTATTGATACAATACAAAGGAAATTAAATAGATCAAGAGGGTCTAGGAGACATCATAGTCACACTATCTCAGAGAAGGGAACCACATTCCTTGTGCCTACAACCTCACCATCACCCTCAACACATGTCTCCCGCCTACAAAGTTTTGCAGAAAGACCTCTTGCTCAGCCACTCCCACTCCCAGGGACGCATCGCCTCTCCACCAATCGTGCAAATTCTGGAACTAGTGTAACATCAAAACCAGAAAGCACCAGGGGCTCGAAATCATCTCTATATTTCCCCTTACCGAAACCTGGTTGTGTTTTTAACGGGGGAGAACCTACAGATGCTGAGGAAGATATTGGCACTGCATCAATTTCTAGCGGCAGCTCTATTGATAGTGATGACCAATGTGACTCACATTTTCTTAGTCCTCTGGCATCTGACTCTGAAAATGGAAACCGAGCTACCGTTCACAGTACTGTCAGTGGGGTTCACAAGGATCAGCCGCCCATTACCATCCCAAAAAACTCAAGGGTATCCTCAAAACCAGCTCCTCAACTGTGCAATCATCAAATTTTATCTAACACACCCAAAGGGGCTTCTTTGCATATGCCGAATCTGCAAATAGCTTGTTCAGGTGGTTTATGGAGTGCTCCAGACAGTTCAATGTCAAGTCCTTCTAGAAGTCCACTGAGAACGTTTGGTTCCGAGCAAGTTTTGAACTCTGGATTCTGTACAGGAAAGCCATATCCAGATTTAGCTTCTGGACACTGCTCTAGTCCAGGTTCAGGCCATAATTCAGTTGGTGGGGATCTGACAGTGCAGATATTCTGCCCACAGAACAGGTGTAGCCCTGAGTGTTCTCCAATACCCAGTCCCGGAATGAAAAGTCCCGGTTTCAGTTCCAGGATACACAGCAGTGCTGTCTCCCCTCTTCATCCACGTGCTGGAAGTGCTACATTAGAATCGCCCACAAGACGCCCTGATGATGTGAAACAACAGACTCACCGATTACCTCTTCCTCCAATAACAATCCCTAATTATTGTCCATTTTCTCCAACATATTCTGCAACTACTACTCCTTCAGCGCCTCGTAGTCCCAGCATAGCAGAAAATCTAACAAGCCCTGGCTCACGCTGGAAAAAGGGACAACTGCTTGGAAGGGGGACATTTGGGCATGTATATCTTGGTTTTAACAGTGAAAGTGGTGAGATGTGTGCAATGAAGGAGGTAACTCTTTTTTCAGATGATGCTAAATCAAGGGAAAGTGCTCAACAACTTGGCCAAGTAGATGACAAACTTTATATATACTTGGAGTATGTCTCTGGTGGGTCAATCTATAAGTTGCTTCAACAGTATGGCCAGCTTAGTGAAATTGTTATTCGTAATTATACTCGGCAAATTCTGTTAGGTCTTGCTTATTTACATGCTAAGAACACTGTTCATAGAGACATTAAAGCAGCAAACATATTGGTGGATCCTAATGGGAGGGTAAAATTGGCAGATTTTGGCATGGCAAAGCATATAAGTGGGCAATCCTGTCCATTATCTTTCAAAGGAAGTCCTTACTGGATGGCACCTGAGGTGATAAAAAATTCAAATGGTTGTAATCTTGCTGTTGATATATGGAGCCTTGGCTCTACCGTTTTTGAGATGGCTACTACAAAACCTCCTTGGAGCCAATACGAAGGGGTTGCGGCTATGTTTAAGATTGGAAACAGCAAGGACCTTCCTGCAATGCCAGATCATCTATCAGAAGATGGAAAAGATTTTATCAGGCAATGCTTGCAAAGGAATCCAGTGCATCGTCCCTCTGCTGCTCAACTTCTGCTGCATCCATTTGTTAAAAAAGCCACACTGGGAAGACCTATTCTGTCTGCTGATCCTTCAGAAGCAAAACCTGATTTTGTGAATGCTATGAGATCTCTGGCCATTGGACCTGCAAAACATAATTTAGCCTTAGTTTCAGAAGCAGCTGGTACATATCTGTCTAGAAGCTCGAGAACTGGCTCAGGATCAAGTGAAGCCCATACACCAAGGAACATTTCATGTCCTGTGTCCCCTCCTGCTGGGAGCCCACTTTTGCCTCCTAGGTTACTGCATGTGACTGGACGGCTGTCTCCATCTCCCATATCTAGTCCTCACACTGCATCAGGCTCATCTACACCACTCACTGGTGGCATTGGTGCAGTCCCTTTTCATCAAACAAAGCAGCCAATATTCTCACATGAAGGTGTCAATGTGATACAAAGACCTCAAAATGCTCTTAATTCAAATGGAAGCACTGCTTATCAGGAGCCAAATTGTGACCCACTTTGGAGGATTCTGAAAAGCACTTTTGCTTGCCCGGATATAGTTTCATCCAACAATGATGCTCTTGGAAACCATAATAGAAGGGTTGGCCAGGGACTCCCAAGAGAATTTTACGATGGGAAGTCATATTTAGCGGATGGTGTATCGCAGCAGCTGTTAAATGATCATGTAAGAAAATTTCATTCCTAG 2547 0.4405 MSSWWKKSSSKDVKRKEKRKSIIDTIQRKLNRSRGSRRHHSHTISEKGTTFLVPTTSPSPSTHVSRLQSFAERPLAQPLPLPGTHRLSTNRANSGTSVTSKPESTRGSKSSLYFPLPKPGCVFNGGEPTDAEEDIGTASISSGSSIDSDDQCDSHFLSPLASDSENGNRATVHSTVSGVHKDQPPITIPKNSRVSSKPAPQLCNHQILSNTPKGASLHMPNLQIACSGGLWSAPDSSMSSPSRSPLRTFGSEQVLNSGFCTGKPYPDLASGHCSSPGSGHNSVGGDLTVQIFCPQNRCSPECSPIPSPGMKSPGFSSRIHSSAVSPLHPRAGSATLESPTRRPDDVKQQTHRLPLPPITIPNYCPFSPTYSATTTPSAPRSPSIAENLTSPGSRWKKGQLLGRGTFGHVYLGFNSESGEMCAMKEVTLFSDDAKSRESAQQLGQVDDKLYIYLEYVSGGSIYKLLQQYGQLSEIVIRNYTRQILLGLAYLHAKNTVHRDIKAANILVDPNGRVKLADFGMAKHISGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGSTVFEMATTKPPWSQYEGVAAMFKIGNSKDLPAMPDHLSEDGKDFIRQCLQRNPVHRPSAAQLLLHPFVKKATLGRPILSADPSEAKPDFVNAMRSLAIGPAKHNLALVSEAAGTYLSRSSRTGSGSSEAHTPRNISCPVSPPAGSPLLPPRLLHVTGRLSPSPISSPHTASGSSTPLTGGIGAVPFHQTKQPIFSHEGVNVIQRPQNALNSNGSTAYQEPNCDPLWRILKSTFACPDIVSSNNDALGNHNRRVGQGLPREFYDGKSYLADGVSQQLLNDHVRKFHS* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1873 848 MobiDBLite consensus disorder prediction 1 112 - -
Gso1g1873 848 MobiDBLite consensus disorder prediction 721 740 - -
Gso1g1873 848 ProSiteProfiles Protein kinase domain profile. 395 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1873 848 MobiDBLite consensus disorder prediction 679 696 - -
Gso1g1873 848 MobiDBLite consensus disorder prediction 8 31 - -
Gso1g1873 848 Gene3D Transferase(Phosphotransferase) domain 1 393 652 - -
Gso1g1873 848 SMART serkin_6 395 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1873 848 Pfam Protein kinase domain 446 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1873 848 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 776 - -
Gso1g1873 848 MobiDBLite consensus disorder prediction 46 68 - -
Gso1g1873 848 MobiDBLite consensus disorder prediction 83 111 - -
Gso1g1873 848 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 776 - -
Gso1g1873 848 MobiDBLite consensus disorder prediction 126 198 - -
Gso1g1873 848 SUPERFAMILY Protein kinase-like (PK-like) 393 712 IPR011009 -
Gso1g1873 848 ProSitePatterns Protein kinases ATP-binding region signature. 401 424 IPR017441 GO:0005524
Gso1g1873 848 MobiDBLite consensus disorder prediction 679 744 - -
Gso1g1873 848 MobiDBLite consensus disorder prediction 309 354 - -
Gso1g1873 848 MobiDBLite consensus disorder prediction 135 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1873 Gso-Chr1 55456859 55464823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1873 4 844 MAP Kinase Kinase Kinase AT1G63700 56.580 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso1g1873 Pkinase 4.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1873 K20717 - gmx:100777350 1613.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1873 1 55456859 55464823 Gso1g1873 1 55456859 55464823 ECH