Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1864 ATGGATGGGAGAGAAGGCATGGCATTTCCTGGTGGCTCTGTTCCATATTACATGCAGCATAGAGGAGGAGGGGTTAGTGGGTCTGGTCCAGGAACTGGGACACAGAGTGGAGGGTTTCAACCACCCTCTGGCTTTAGAGCTTTGTCAAATGTCTCTCCAGGTTCTGCATTTAAAGTAGAGTCTCATTCTTATTCTCATTCTCAGTCTCAGCCTCAGCATGCTAGTTTTAGTCATGGCATTAACATAGGTTCCTCTCCTGATGGTGGAGGTGGAGGACCTTCTTCTGGTGAGCCTGTGAAGAAGAAAAGAGGGAGGCCTAGGAAGTATGGCCCTGATGGATCTGTTTCATTGATGCTCTCTCCCATGTCTGCCACTGCTAGTTCCACGCCGGGATCAGGCACTTCTTCGGAGAAACGGCCCAGAGGGCGCCCACCTGGAAGTGGAAGGAAGCAACAGCTTGCCACTCTAGGTGAATGGATGAACAGTTCTGCAGGACTGGCTTTTTCACCTCATGTTATCACCGTTGGAGTTGACGAGGACATTGTAGCAAAGTTATTGTCATTTGCACGGCAGAGACCAAGGGCTGTGTGCATCTTAACAGGAACTGGGACAATTTCTTCAGTCACTCTGCGCCAGCCTGCTTCTACTAGCATCGGTGTCACTTATGAGGGCCGATTTCAAATATTATGCTTGTCTGGTTCATACTTGGTTGCTGAAGAAGGTGGACCTCACAATAGAACAGGTGGCATGAGTGTTTCCCTTTCTAGTCCTGATGGTCATATTATTGGTGGTGGTGTTACTAGGCTTGTTGCTTCAAGCCCAGTGCAGGTGGTAGCATGCAGTTTCGTATATGGGGGCTCCAAGCCAAAGACTAAACAAGTGACCACTACTACTACAGAAGATACCAGTTCAGAGCCTCAGAGTAGTGATAAGTTAGCTTCTCCAGGCAGTGTTCCTCCGCCTAATCAAAACTACACCTCTTCTCCTGCCCCAGGCATTTGGCCTGCATCATCAAGGCCAGTAGAGGTGAAAAGTGCACATGCACACACTGGTATTGACTTGACGCGTGGGTGA 1074 0.4916 MDGREGMAFPGGSVPYYMQHRGGGVSGSGPGTGTQSGGFQPPSGFRALSNVSPGSAFKVESHSYSHSQSQPQHASFSHGINIGSSPDGGGGGPSSGEPVKKKRGRPRKYGPDGSVSLMLSPMSATASSTPGSGTSSEKRPRGRPPGSGRKQQLATLGEWMNSSAGLAFSPHVITVGVDEDIVAKLLSFARQRPRAVCILTGTGTISSVTLRQPASTSIGVTYEGRFQILCLSGSYLVAEEGGPHNRTGGMSVSLSSPDGHIIGGGVTRLVASSPVQVVACSFVYGGSKPKTKQVTTTTTEDTSSEPQSSDKLASPGSVPPPNQNYTSSPAPGIWPASSRPVEVKSAHAHTGIDLTRG* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1864 357 CDD DUF296 170 282 IPR005175 -
Gso1g1864 357 Pfam Plants and Prokaryotes Conserved (PCC) domain 170 283 IPR005175 -
Gso1g1864 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 357 IPR039605 GO:0003680
Gso1g1864 357 ProSiteProfiles PPC domain profile profile. 162 303 IPR005175 -
Gso1g1864 357 MobiDBLite consensus disorder prediction 118 136 - -
Gso1g1864 357 PRINTS AT-hook-like domain signature 100 110 IPR017956 GO:0003677
Gso1g1864 357 PRINTS AT-hook-like domain signature 136 147 IPR017956 GO:0003677
Gso1g1864 357 MobiDBLite consensus disorder prediction 1 151 - -
Gso1g1864 357 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 357 - -
Gso1g1864 357 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 284 - -
Gso1g1864 357 MobiDBLite consensus disorder prediction 289 333 - -
Gso1g1864 357 MobiDBLite consensus disorder prediction 28 82 - -
Gso1g1864 357 Gene3D - 170 299 - -
Gso1g1864 357 MobiDBLite consensus disorder prediction 289 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1864 Gso-Chr1 55381947 55386507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1864 1 357 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 48.214 1.02e-96 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1864 - - gmx:100795781 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1864 1 55381947 55386507 Gso1g1864 1 55381947 55386507 ECH