Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1857 ATGAAGCCTTGCACTTTGTTGTTGTTTCTCAGTTTTATCTCCACGCTCTCTTTTGTGGTTTCTGACACAGTGCCCTCAAACGAAGTTTGGGCGCTTAGGAGCTTCAAAGAAGCTGTCTATGAAGACCCATATCAAGTTTTATCCAATTGGGATACGGTGGAATCAGATCCTTGTAACTGGTTTGGCGTCTTATGCACTATGGTTCGAGATCATGTCATCAAGCTAAACATATCAGGATCATCATTAAAGGGGTTTCTTGCACCAGAGCTGGGGCAAATCACCTACTTGCAGGCACTAATTTTGCATGGCAACAATTTCATTGGAACAATACCTAGAGAGTTGGGTGTGTTGGAATCTCTCAAGGTGTTGGATTTGGGAATGAACCAATTAACGGGACCAATTCCTCCAGAGATTGGAAATCTAACCCAAGCTGTGAAAATAAACTTGCAGTCCAATGGGTTGACTGGTAGGCTACCTCCGGAGCTTGGAAACTTGAGATACCTTCAAGAACTTCGGCTGGATAGGAATAGGCTTCAAGGACCTATTCCTGCTGGTGGTAGCTCAAATTTTGCTTCAAATATGCATGGGATGTATGCATCAAAGGAGAATGTAACTGGCTTCTGTCGTTCGTCTCAGTTGAAAGTAGCAGACTTCTCATTTAATTTTTTAGTTGGTAGGATACCCAAATGCTTGGAGTATCTTCCAAGCAGGTTAAGCTTTCAAGGGAATTGCCTCCAGGGTCAGGAGTTAAAGCAGCGGTCTTCTATACAGTGTGCGGGTGCCTCACCTGCCAGTGCCAAGAGCCAGCCAGTGGTGAATCCAAATCACCAACCTGCTGAATATGTGTCCAAGCATCACAGAGCATCGAAGCCTGTTTGGCTTTTGGCTCTAGAAATAGTAACTGGAACTATGGTGGGCTCTCTCTTTCTGGTTGCTGTTCTTGCTGCTTTTCAGAGATGTAACAAAAAATCATCTATCATTATTCCTTGGAAAAAATCTGGAAGCCAAAAAGATCATACAGCAGTATATATAGACCCTGAGTTTTTGAAGGATGTGAGAAGGTATAGCAGACAGGAGCTTGAAGTTGCCTGTGAAGACTTCAGCAACATAATTGGGTCCTCACCAGATAGTGTGGTGTACAAGGGAACAATGAAAGGTGGGCCTGAGATTGCTGTGATTTCCCTCTGCATCAAGGAGGAGCATTGGACAGGATATCTTGAGCTCTATTTTCAGAGAGAGGTGGCAGACTTGGCAAGGTTAAATCATGAGAATATAGGAAAACTACTGGGCTATTGTAGAGAGGACACTCCATTTACAAGGATGTTGGTTTTTGATTATGCTTCAAATGGGACACTTCATGATCACTTACATTGTTATGAAGAAGGATGTCAATTCTCTTGGACACGGCGTATGAAGATTGCCATAGGTATTGCACGTGGACTCAAGTATTTGCATACAGAAGTGGAGCCTCCATTCACTATCTCAGAGCTGAATTCTAGTGCTGTATACCTTACAGAAGAATTTTCCCCTAAGTTGGTTGATTTTGAAAGTTGGAAGACAATCCTTGAAAGATCAGAAAAGAATTCTGGTTCCATTGGCAGCCAAGGTGCTATCTGTGTTCTTCCAAATTCCCTTGAAGCACGCCATCTTGATACCAAAGGAAACATATTTGCTTTTGGGGTACTTCTGCTAGAGATAATCAGCGGGAGACCTCCATACTGTAAGGACAAAGGGTACTTGGTGGACTGGGCCAAGGACTATCTTGAAATGCCAGATGAAATGTCATGTGTAGTGGATCCTGAAATGAAATTTTTTAGATATGAAGACCTCAAAGTGATATGCGAGGTAATAACTCTTTGTGTCAATCCTGATACAACTGTGCGCCCATCTATGCGAGAATTATGTAGCATGCTGGAGAGCAGAATTGACACATCAGTAAGCGTGGAGCTCAAGTCATCATCTTTGGCTTGGGCTGAACTTGCACTTTTATCGTAA 1995 0.4296 MKPCTLLLFLSFISTLSFVVSDTVPSNEVWALRSFKEAVYEDPYQVLSNWDTVESDPCNWFGVLCTMVRDHVIKLNISGSSLKGFLAPELGQITYLQALILHGNNFIGTIPRELGVLESLKVLDLGMNQLTGPIPPEIGNLTQAVKINLQSNGLTGRLPPELGNLRYLQELRLDRNRLQGPIPAGGSSNFASNMHGMYASKENVTGFCRSSQLKVADFSFNFLVGRIPKCLEYLPSRLSFQGNCLQGQELKQRSSIQCAGASPASAKSQPVVNPNHQPAEYVSKHHRASKPVWLLALEIVTGTMVGSLFLVAVLAAFQRCNKKSSIIIPWKKSGSQKDHTAVYIDPEFLKDVRRYSRQELEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIKEEHWTGYLELYFQREVADLARLNHENIGKLLGYCREDTPFTRMLVFDYASNGTLHDHLHCYEEGCQFSWTRRMKIAIGIARGLKYLHTEVEPPFTISELNSSAVYLTEEFSPKLVDFESWKTILERSEKNSGSIGSQGAICVLPNSLEARHLDTKGNIFAFGVLLLEIISGRPPYCKDKGYLVDWAKDYLEMPDEMSCVVDPEMKFFRYEDLKVICEVITLCVNPDTTVRPSMRELCSMLESRIDTSVSVELKSSSLAWAELALLS* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1857 664 Pfam Protein tyrosine and serine/threonine kinase 369 638 IPR001245 GO:0004672|GO:0006468
Gso1g1857 664 Gene3D Phosphorylase Kinase; domain 1 339 446 - -
Gso1g1857 664 ProSiteProfiles Protein kinase domain profile. 365 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1857 664 SUPERFAMILY Protein kinase-like (PK-like) 343 639 IPR011009 -
Gso1g1857 664 SUPERFAMILY L domain-like 26 236 - -
Gso1g1857 664 PANTHER PROTEIN MALE DISCOVERER 2 5 662 - -
Gso1g1857 664 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 662 - -
Gso1g1857 664 Gene3D Transferase(Phosphotransferase) domain 1 447 654 - -
Gso1g1857 664 Gene3D Ribonuclease Inhibitor 26 206 IPR032675 -
Gso1g1857 664 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1857 Gso-Chr1 55340470 55345947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1857 9 639 Receptor kinase-like Gene Family AT5G16000 27.439 4.83e-54 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Gso1g1857 PK_Tyr_Ser-Thr 4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1857 - - gmx:100794714 1299.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1857 1 55340470 55345947 Gso1g1857 1 55340470 55345947 ECH