Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1847 ATGTTGGAGGTTAAAAAGGAGCTCAACGATTTCAATTTTGATTCACGGCTTCCAGATGGACTCAATTTATGTTTTTCTTCTTCTCCCAATTGCAACACCGATACCTTTCTTCAGGAATCAACCCCAATTGCAGGGACAACAAAAGCACGAGCTAGACGCTGGACAGAAGAAGAGGACAAACTTTTGAGTGAGAAGGTCAAGAAGCACAATGGAAGGAACTGGAAGAAAATAGCTGCATACCTCCCTGGGCGAACTGACGTCCAATGTTTGCATCGCTGGCAAAAGGTTTTAAATCCTGATCTTGTAAAGGGTTCATGGACAAAGAAGGAAGATGATCGCCTCATTGAACTGGTCAGAAAGTATGGTATCAAGAGATGGTTTTTTATTGCAAAATACTTGCCAGGTCGTATTGGAAAGCAATGCCGAGAGAGGTGGCACAATCATCTTGATCCAACCGTAAAGAAGGATGCATGGACAGAGGAGGAGGAACTAATACTTGCTTACTATTACCAAATATACGGCAGTAAGTGGGCAGAAATTGCAAGGATTCTTCCCGGAAGGACTGACAATGCTATAAAAAATCATTGGAACTGCTCAATGAAGAAGAAATTGGATGCATCACCCTTAGGGTGTGACATAAAAGTTGCCTCTTCCGGTTTCTGTGCTTCTGGAATAAGGCCTGAACATGTTGTGGCTAAAGTGGAGGGTCAAAGTTTCAATGGAATGGTTTCTCCCAAGCAGAGTCACTGGTTGAATCGCAGTGTTGATAACATTCTAACAAAATTGATTCTTCAAAATGATTCAGGAGAGGAATCTTGCTCTGCTTCATCCAGGGGGACTCCTACTCCTAGGGCCTCAAGACAGTTTTTGGATAATTCTCTGGATTGTTTACCTCTTTCCAGTACTGTTACAGATGAGGCCTATGAGTCACTGAAACGGCAAAAGGTTTATTTTTCAGATACAGAGCTTAAAGTGGGTGATGAATCTGACAGTCCCCTTTTGAATTTGAGCTACTCAAAATCTGCCAACCGTGAGAAGAAAGGTCAAGCTGGAAATGGAGGCAATTACAACTCAAACAACACTATGCCACATAGTGTAGATGAATTCAGTGAATGTCTAAGTCCAAAAACACACATGGCATTGGCATGTGCATACAATAACGGTTGTACTCCCCCAACGTCTATACTCAAGAATGACACAGGCGACATCAACCCAGAAACTTTGCTAAGAAACTTAGCAATGACCTATGAGAATGTTCCTTCTATTATAAGGAAAAGGACACCCAAGAAGGCAAGCTGTTGTGACCGTGACCAAGCACCTTCGAGAATGATCGTAAATTCTCCTGAAGCAGAATGTGTTATTGGCTTAGATAATTTAAAACTGAACAGGGGGTTTATTCCATTCCTTCGTAGACCAAATACTCAGCCATAG 1431 0.4207 MLEVKKELNDFNFDSRLPDGLNLCFSSSPNCNTDTFLQESTPIAGTTKARARRWTEEEDKLLSEKVKKHNGRNWKKIAAYLPGRTDVQCLHRWQKVLNPDLVKGSWTKKEDDRLIELVRKYGIKRWFFIAKYLPGRIGKQCRERWHNHLDPTVKKDAWTEEEELILAYYYQIYGSKWAEIARILPGRTDNAIKNHWNCSMKKKLDASPLGCDIKVASSGFCASGIRPEHVVAKVEGQSFNGMVSPKQSHWLNRSVDNILTKLILQNDSGEESCSASSRGTPTPRASRQFLDNSLDCLPLSSTVTDEAYESLKRQKVYFSDTELKVGDESDSPLLNLSYSKSANREKKGQAGNGGNYNSNNTMPHSVDEFSECLSPKTHMALACAYNNGCTPPTSILKNDTGDINPETLLRNLAMTYENVPSIIRKRTPKKASCCDRDQAPSRMIVNSPEAECVIGLDNLKLNRGFIPFLRRPNTQP* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1847 476 ProSiteProfiles Myb-like domain profile. 98 149 IPR001005 -
Gso1g1847 476 PANTHER MYB PROTEIN-RELATED 53 268 - -
Gso1g1847 476 PANTHER TRANSCRIPTION REPRESSOR MYB5 53 268 - -
Gso1g1847 476 SMART sant 50 99 IPR001005 -
Gso1g1847 476 SMART sant 102 151 IPR001005 -
Gso1g1847 476 SMART sant 154 202 IPR001005 -
Gso1g1847 476 MobiDBLite consensus disorder prediction 329 360 - -
Gso1g1847 476 SUPERFAMILY Homeodomain-like 50 104 IPR009057 -
Gso1g1847 476 CDD SANT 157 197 IPR001005 -
Gso1g1847 476 Pfam Myb-like DNA-binding domain 103 149 IPR001005 -
Gso1g1847 476 Pfam Myb-like DNA-binding domain 155 197 IPR001005 -
Gso1g1847 476 Pfam Myb-like DNA-binding domain 53 97 IPR001005 -
Gso1g1847 476 Gene3D - 103 154 - -
Gso1g1847 476 ProSiteProfiles Myb-like domain profile. 150 200 IPR001005 -
Gso1g1847 476 CDD SANT 105 149 IPR001005 -
Gso1g1847 476 Gene3D - 156 212 - -
Gso1g1847 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 153 IPR017930 -
Gso1g1847 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 154 204 IPR017930 -
Gso1g1847 476 CDD SANT 53 97 IPR001005 -
Gso1g1847 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 97 IPR017930 -
Gso1g1847 476 ProSiteProfiles Myb-like domain profile. 46 97 IPR001005 -
Gso1g1847 476 SUPERFAMILY Homeodomain-like 100 196 IPR009057 -
Gso1g1847 476 MobiDBLite consensus disorder prediction 332 360 - -
Gso1g1847 476 Gene3D - 50 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1847 Gso-Chr1 55255101 55258774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1847 54 426 MYB Transcription Factor Family AT5G02320 39.119 8.48e-78 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso1g1847 Myb_DNA-binding 1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1847 - - gmx:100814774 892.493