Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1846 ATGAAGCCATTACCGGCGGAGCAAACCGGTGAATCAGCGCCGACGGAGTTGCAGAGATCCATTCCGACGCCTTTTCTGACCAAGACGTACCAGCTCGTCGATGATCCCTCCGCGGATGACCTAATTTCCTGGAACGAAGATGGCACCAGCTTCATCGTTTGGCGACCCGCGGAATTCGCTAGGGATTTGCTTCCTAAGTACTTCAAACACAACAACTATTCCAGTTTCGTCCGTCAGCTTAACACCTATGGTTTCCGGAAGGTTGTCCCTGACCGTTGGGAATTCGCCAACGACTGTTTCCGGCGAGGCGAGAGAGCTCTTCTTCGCGACATACAGCGCCGGAAATTACTGCCGGTTCCGCCTGCAGCCGCGGCACCGACAGCAGTCACAGCTAATACGGTGACGGTGGCTGTGGCGGCACCGGCGGTGAGAACGGTGTCTCCGACGACTTCCGGCGACGAACAGGTACTATCCTCGAACTCATCTCCGATTGCTGGGAATAATAATAATACAGTGCACCGTACCACAAGTTGCACCACTGCGCCCGAGCTGCTAGACGAGAATGAAAGGCTTAGGAAAGAGAACATGCAACTGAGTAACGAGTTGAGTCAATTGAAGGGTTTGTGTAATAACATACTCGCTTTGATGACCAATTATGCTTCTGGTTTTAGCCGCCAGCAGTTAGAATCCTCCACTAGCGCTGCGAGGACCGTGCCGGTGCCGGAAGGGAAGGCGGCGCTGGAGCTTTTGCCTGCGAAACATGTTTCATCGGCTGATGAGGCCGGGCATGTAGGTGGTGCCGCGCCGTGCGCGACGGCGAACGCGGGGGAAGCAGAGGTTCCGAAGCTGTTTGGGGTTTCGATTGGACTGAAACGATGTAGGACAGAGTGCGAGGGCGAAGCGGAGGGAGAAGATCAGAATCAAATGCAAACGCGAGCACAAGCACAAACGCAAACACAATCGTCGCAAGAACCAGATCACGGTTCAGATGTGAAATCTGAACCGCTTGATGGCGATGACTCGGATGATCAGGATCATGATCCTCGTTGGTTGGAGCTAGGTAAATGA 1068 0.5403 MKPLPAEQTGESAPTELQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNYSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERALLRDIQRRKLLPVPPAAAAPTAVTANTVTVAVAAPAVRTVSPTTSGDEQVLSSNSSPIAGNNNNTVHRTTSCTTAPELLDENERLRKENMQLSNELSQLKGLCNNILALMTNYASGFSRQQLESSTSAARTVPVPEGKAALELLPAKHVSSADEAGHVGGAAPCATANAGEAEVPKLFGVSIGLKRCRTECEGEAEGEDQNQMQTRAQAQTQTQSSQEPDHGSDVKSEPLDGDDSDDQDHDPRWLELGK* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1846 355 Coils Coil 181 208 - -
Gso1g1846 355 MobiDBLite consensus disorder prediction 301 355 - -
Gso1g1846 355 MobiDBLite consensus disorder prediction 148 175 - -
Gso1g1846 355 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1846 355 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1846 355 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Gso1g1846 355 MobiDBLite consensus disorder prediction 304 326 - -
Gso1g1846 355 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1846 355 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1846 355 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1846 355 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2B 8 344 - -
Gso1g1846 355 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 344 IPR027725 -
Gso1g1846 355 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso1g1846 355 Gene3D - 18 115 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1846 Gso-Chr1 55250727 55252859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1846 18 355 HSF AT4G11660 52.874 5.89e-99 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso1g1846 HSF_DNA-bind 2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1846 K09419 - gmx:100791020 641.728