Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1845 ATGGCCACCACAAGGTCATCTTCCGAGGACATCGTCGATTCCACGCCGCTGCTCGCCAATTCCGGCGGCTCCTCCGACGAGCTCACCTCCGGCCGCGGTTTTTCGCGGCGACAGCGGCTACGGCAGGCGGCGCGGTTCCTCCGGCGGGCGAGCGGGCGCCGGATGATGCGCGAGCCGTCGATGCTGGTCCGGGAGGCCGCGGCGGAGCAATTGGAGGAGCGGCAGAGCGATTGGGCGTATTCGAAGCCGGTGGTGGTTCTGGACATCGTGTGGAACTTCGCGTTTGTGGTTGTGGCGGGGGCCGTGCTGGTTTTGAGCGCGAGCGAAGCGCCGGGCATGCCTCTGAGGTTGTGGATTGTAGGGTACGCTATGCAATGCGTCCTTCACATGGTTTGCGTTTGCGTCGAGTATAGGAGGCGGAGGAGGCAGCAACGCGCCGCCGCCTCGTCAGTGCAAGACAGGGTTGGGAGCAGCAGTGGAAATTTGAGTGTATCTTCGAGGGAGGGTTCTGCTTCTGGCTCGGCGCAGTATGTGTCGTTGGGCCAACTCGATGACGAGGGTACTAGTGTTGCAAAGCATTTGGAATCAGCAAATACAATGTTTTCATTTGTTTGGTGGATTATTGGATTCTACTGGGTATCAGCTGGGGGTCAAGCATTAGCCCAAGACTCTCCTCAGCTTTACTGGCTATGTATAATCTTCCTGGGTTTTGATGTTTTCTTTGTTGTTTTCTGTGTTGCACTTGCGTGCATCATTGGTATTGCTGTTTGCTGTTGCCTTCCATGTATCATTGCACTTCTTTATGCAGTTGCAGACCAGGAAGGGGCATCAAAGGAAGACATTGAGCAGTTGTCAAAGTTTAAATTCCGAAGAATTGAAAGTAATGAGAAACTTACCGGTACTATACAAGGACCTGTTGGAGGAATAATGACCGAATGCCAGGCTGATTCACCTATTGAACATGTTCTTGCTGAGGAAGATGCGGAATGTTGCATCTGCCTTTCTTCTTACGATGATGGGGTTGAGCTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGTCTGTGTGGATAAATGGCTGTATATTAATGCTACATGCCCCCTCTGCAAGTATAACATCTTAAAAAGTAACACCCTCAGTCAAGAGGAAGTGTAG 1158 0.5225 MATTRSSSEDIVDSTPLLANSGGSSDELTSGRGFSRRQRLRQAARFLRRASGRRMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNFAFVVVAGAVLVLSASEAPGMPLRLWIVGYAMQCVLHMVCVCVEYRRRRRQQRAAASSVQDRVGSSSGNLSVSSREGSASGSAQYVSLGQLDDEGTSVAKHLESANTMFSFVWWIIGFYWVSAGGQALAQDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRIESNEKLTGTIQGPVGGIMTECQADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCVCVDKWLYINATCPLCKYNILKSNTLSQEEV* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1845 385 MobiDBLite consensus disorder prediction 1 35 - -
Gso1g1845 385 CDD RING-H2_RNF111_like 329 373 - -
Gso1g1845 385 SMART ring_2 330 370 IPR001841 -
Gso1g1845 385 Pfam Ring finger domain 329 371 IPR001841 -
Gso1g1845 385 MobiDBLite consensus disorder prediction 148 169 - -
Gso1g1845 385 MobiDBLite consensus disorder prediction 1 31 - -
Gso1g1845 385 ProSiteProfiles Zinc finger RING-type profile. 330 371 IPR001841 -
Gso1g1845 385 PANTHER TARGET OF ERK KINASE MPK-1 3 385 - -
Gso1g1845 385 SUPERFAMILY RING/U-box 320 376 - -
Gso1g1845 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 384 IPR013083 -
Gso1g1845 385 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1845 Gso-Chr1 55236704 55242552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1845 14 378 C3H Transcription Factor Family AT1G68070 50.000 1.20e-119 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1845 - - gmx:100790497 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1845 1 55236704 55242552 Gso1g1845 1 55236704 55242552 ECH