Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1844 ATGGGTAAGGCTTCCAAATGGTTTCGCGGCCTTCTCGGTCTCAAAAGACCAGACTCGCCGTCTCCCAAAGAAAAACGCCGCTGGACCTTCGTCAAGTCCTACAGAGAAAAGGACCCCACCCGCATCGTAGCCGCCACCCCCCGCCGCTGCCCTGCCACCACCGCCGGAGGCAATACTCCTGAAGAATGGGCTGCCGTCAAGATTCAAGCCGCCTTTCGAGGCTCTTTGGCAAGGAAAGCCCTTCGAGCGTTGAAAGGATTGGTGAAGCTACAGGCATTAGTGAGAGGTCACATTGAGAGGAAGCGCACAGCAGAGTGGCTGCAAAGAGTGCAAGCACTCTTACGTGTACAGGCCCAAATCCGTGCTGGCCGGGCCCAAATTTTGCACTCCCCCTCTTCCACTTCCCACCTCCGTGGTCCAGCTACACCAGACAAATTTGAAATCCCCATCAGATCCGAGAGCATGAAATATGATCAGTACTCGTCACCACTACTCAAGAGAAACAGCTCTAAATCCCGTGTACAGATCAATGGCGGCAATCAAGAGAGATGCAGGAGTAGATCATCAGATAGTCGCATTGATGAACAACCATGGACTCAACGAAGATCATGGACCAGAGGCTGTAGTATGGATGAAGAGAGAAGTGTGAGGATTCTAGAAATTGATTCTGTAAAACCACACGTGACATCAAAACGTAGAAACCTCTTCTACTCCCCTAGCCAAGCTATGGTTGTTTCGGACCATTACAGTGGGTGTAATTTAACCACCACAAGTCCATCTTCTTATAATAGCCCTCTAAAAATCAACGAGCTTGAGGAGAGTTCATTTTGCGCTGCTGATAATAGTCCTCAAGCTTTATCTTTATCTTCCTCTTCTAAAGATGGTGCCTCCAAAAGAAGCCCTCTTACTCCTACCAGGAGTGATGGCTCAAGAAGCTTCTTAAGTGGTTATTCTGAACCAAACTATCCAAGTTACATGGCTTACACAGAGTCTTCAAAGGCAAAGTTAAGATCTCTGAGTGCTCCAAAGCAGAGGCCACAGTATGAGAGGTGTAGTTCATCAAACAGGTACTCGCTTCATGGATTGGCCACACAAAGGATAGCCGCATTACACGCAAGCTTCACTAACAAAGCTTACCCTGGTTCTGGTCGTTTGGACAAGCTTGGAATGCATGTCCCGTATAAATACTGA 1191 0.4836 MGKASKWFRGLLGLKRPDSPSPKEKRRWTFVKSYREKDPTRIVAATPRRCPATTAGGNTPEEWAAVKIQAAFRGSLARKALRALKGLVKLQALVRGHIERKRTAEWLQRVQALLRVQAQIRAGRAQILHSPSSTSHLRGPATPDKFEIPIRSESMKYDQYSSPLLKRNSSKSRVQINGGNQERCRSRSSDSRIDEQPWTQRRSWTRGCSMDEERSVRILEIDSVKPHVTSKRRNLFYSPSQAMVVSDHYSGCNLTTTSPSSYNSPLKINELEESSFCAADNSPQALSLSSSSKDGASKRSPLTPTRSDGSRSFLSGYSEPNYPSYMAYTESSKAKLRSLSAPKQRPQYERCSSSNRYSLHGLATQRIAALHASFTNKAYPGSGRLDKLGMHVPYKY* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1844 396 MobiDBLite consensus disorder prediction 163 198 - -
Gso1g1844 396 ProSiteProfiles IQ motif profile. 85 112 IPR000048 GO:0005515
Gso1g1844 396 MobiDBLite consensus disorder prediction 286 315 - -
Gso1g1844 396 PANTHER IQ-DOMAIN 5-RELATED 53 391 - -
Gso1g1844 396 Gene3D - 6 86 - -
Gso1g1844 396 MobiDBLite consensus disorder prediction 1 27 - -
Gso1g1844 396 Pfam Protein of unknown function (DUF4005) 282 359 IPR025064 -
Gso1g1844 396 ProSiteProfiles IQ motif profile. 61 89 IPR000048 GO:0005515
Gso1g1844 396 PANTHER CALMODULIN BINDING PROTEIN IQD22 53 391 - -
Gso1g1844 396 MobiDBLite consensus disorder prediction 163 184 - -
Gso1g1844 396 Pfam IQ calmodulin-binding motif 88 102 IPR000048 GO:0005515
Gso1g1844 396 Pfam IQ calmodulin-binding motif 63 82 IPR000048 GO:0005515
Gso1g1844 396 SMART iq_5 83 104 IPR000048 GO:0005515
Gso1g1844 396 SMART iq_5 60 82 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1844 Gso-Chr1 55231314 55234738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1844 1 47 IQD Protein Family AT4G23060 50.000 6.19e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1844 - - gmx:100814244 761.525