Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1843 ATGCCTATGCGCATTGCGCACCTCACCTCCAGAACTCCGGCGACTTCAATGAGCAGCGGCGAGGAAAGAGAAACTGCGGCCTTCCGTGCTCTCGCGGATCGCTGCCGGAGCCTCGAGGAGAAGCAGACCAAGCTCAGGGAGGAGTTCGATGAGCTGTTGCAGAAGAACAACCTCACAGTCAGGGACGATAACGATCACGTTAGCGGTAACGGTAACAATAACGAGGTCATTGCTGATTCAACAACCGACGGTTTTCTTTCCGGTTTCATCTTCTCCGGAAATCCCTACGCAACCGTGTTGAAATGCATGGGCCACGCCGTTCACGCTCTTAGAGTTCCCTCCTCCGAGATCGTATACTGGAATCACTCAGCAGAAACTCTGTATGGATGGAAGGACTACGAAATCATTGGCCAAAGAGTAGCTAAAGTCCTAATTGCTGAAGAAAATTATGCATCTCTTCAAAAAATTCTGGAAGGGTTGGTCACAGGCGTACCATGGTCTGGGCAGTTTCCTTTCAAGAAGAGGTCTGGTGAAGTATTTATGGCAATGGTAACAAAAACTCCTCTTTATGAGGATGGTGAGCTTGTTGGTGTTATAGCTGTTTCAAGTGACGCAGCTATATTAAACACTACAAATTCAGAAAATCAAAGAACTTACCAATCTGGTAACAATGGCCAACCTGGAGTACAGAGGTTAAACTTAAAAAGAATTCAGTGGCCTCCACGACCAATGATTGCATCGATGCCACAGATTGCTTCAAGTGTTTCCGATCTGGCATCCAAGCTCCTCCCGGTGCTGAATACTACTGATGACACAGTTTCCCAGAATACTTCAACAGATGCAAATGATGAAAAACTAGAGAAGCGTGGCATATATGAAACAAAACCTCATTCCAGACATCACCATAAAGAAAACACAACTGTCACTGAGGCCTCTGAGAAGGATGAGTCTACTACAGAATTTGGTCAACCTTCTAATATTGCAGCCAGAGTCCTTGCCAAGCTTCAAATTGGGGCACATGCAAAATGTGGGAAGGATAATGGAAATATCAAAAATAATTGTACAGCTGATAATTCAGGAAGCAATAGAGTGAATAATGAAAATGATTTGCTTGGAGATTTATTGTCATTAAATCGACACCAGGACGTTGCTAATGGAGCAGATAAAGAAGAAAATCTTCATAAATGTAATTCTTTATTTGCAATGAAGAGAGCAGATACAAAAGTTTGTGCATGTAGAGCTTCCAATGTTGTCAAAGATAGTTCTGGTAAACCTTTCTCAGGGGAGTGGTGTGAATGCTTTGGTTCTCCCATTCCCCATGACCCGTTGTTAAGATTACGCTGTCAATTTGATCAGAAGAAATTGGAGCCAGAGGCTATGAATATGGCAACAGGAGATGAAGTGCAAAAGCAGCAAGAAGGGTTGCAATTGCCAAGTTCGAGGGAGAGTATAGGCAGCCATGAAAGTTCATCAAGCAAAGGAGATAATGAGTCAAACTCTGTTTCAAAGTGTGAAATCCATTGGGAACATCTTCAATTAAGAGAAGAGATCGGACAAGGTTCTTGTGCTGTTGTTTATCATGGAATTTGGAATGGATCGGATGTTGCAGTCAAGGTTTACTTCGGGAATGAATACACAGAGGAGACTTTACAAGACTACAGAAAAGAGATTGATATAATGAAGAGATTGAGACACCCTAATGTATTGCTTTTCATGGGAGCAGTATATTCACAGGAAAGACTTGCCATTGTGACAGAGTTATTACCTAGGGGAAGCCTTTTCAAAAATTTGCACAGGAACAATCAGACATTAGACATCAGAAGGCGCCTAAGGATGGCTCTTGATGTTGCTAGAGGAATGAATTATCTTCATCACAGAAATCCACCAATTGTGCATAGAGACCTGAAGTCTTCTAACCTGCTTGTAGATAAAAACTGGACTGTAAAGGTTGGAGACTTTGGCCTGTCTAGGTTGAAGGATGCAACTTTATTAACTACAAAATCTGGGAGAGGCACCCCTCAATGGATGGCCCCTGAAGTCCTAAGAAATGAACCTTCAAATGAGAAGTCTGATGTGTACAGTTTTGGTGTCATCCTCTGGGAACTAATGACTCAATCTATTCCATGGAAAAATTTGAATTCCTTACAGGTTGTTGGAGTCGTAGGCTTTATGGATAGACGACTAGACCTTCCAGAGGGGCTTGATCCCCATGTTGCATCAATCATCGATGACTGCTGGCGAAGTGATCCAGAGCAACGCCCATCATTTGAGGAGCTGATACAGAGAACGTTGTTCCTTGTCAACAGAGTAACAGCAGTGTCAATTAGGAGAATTTCAGAATCCTGA 2346 0.4297 MPMRIAHLTSRTPATSMSSGEERETAAFRALADRCRSLEEKQTKLREEFDELLQKNNLTVRDDNDHVSGNGNNNEVIADSTTDGFLSGFIFSGNPYATVLKCMGHAVHALRVPSSEIVYWNHSAETLYGWKDYEIIGQRVAKVLIAEENYASLQKILEGLVTGVPWSGQFPFKKRSGEVFMAMVTKTPLYEDGELVGVIAVSSDAAILNTTNSENQRTYQSGNNGQPGVQRLNLKRIQWPPRPMIASMPQIASSVSDLASKLLPVLNTTDDTVSQNTSTDANDEKLEKRGIYETKPHSRHHHKENTTVTEASEKDESTTEFGQPSNIAARVLAKLQIGAHAKCGKDNGNIKNNCTADNSGSNRVNNENDLLGDLLSLNRHQDVANGADKEENLHKCNSLFAMKRADTKVCACRASNVVKDSSGKPFSGEWCECFGSPIPHDPLLRLRCQFDQKKLEPEAMNMATGDEVQKQQEGLQLPSSRESIGSHESSSSKGDNESNSVSKCEIHWEHLQLREEIGQGSCAVVYHGIWNGSDVAVKVYFGNEYTEETLQDYRKEIDIMKRLRHPNVLLFMGAVYSQERLAIVTELLPRGSLFKNLHRNNQTLDIRRRLRMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDATLLTTKSGRGTPQWMAPEVLRNEPSNEKSDVYSFGVILWELMTQSIPWKNLNSLQVVGVVGFMDRRLDLPEGLDPHVASIIDDCWRSDPEQRPSFEELIQRTLFLVNRVTAVSIRRISES* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1843 781 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 53-RELATED 31 767 - -
Gso1g1843 781 Coils Coil 28 55 - -
Gso1g1843 781 ProSiteProfiles PAS repeat profile. 114 164 IPR000014 -
Gso1g1843 781 Gene3D Transferase(Phosphotransferase) domain 1 590 771 - -
Gso1g1843 781 SMART serkin_6 511 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1843 781 CDD STKc_MAP3K-like 517 762 - -
Gso1g1843 781 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Gso1g1843 781 Pfam Protein tyrosine and serine/threonine kinase 511 761 IPR001245 GO:0004672|GO:0006468
Gso1g1843 781 MobiDBLite consensus disorder prediction 465 499 - -
Gso1g1843 781 MobiDBLite consensus disorder prediction 292 321 - -
Gso1g1843 781 MobiDBLite consensus disorder prediction 465 500 - -
Gso1g1843 781 MobiDBLite consensus disorder prediction 292 317 - -
Gso1g1843 781 CDD PAS 116 204 IPR000014 -
Gso1g1843 781 Gene3D PAS domain 92 221 - -
Gso1g1843 781 SUPERFAMILY PYP-like sensor domain (PAS domain) 115 204 IPR035965 -
Gso1g1843 781 MobiDBLite consensus disorder prediction 1 23 - -
Gso1g1843 781 PRINTS Tyrosine kinase catalytic domain signature 585 598 IPR001245 GO:0004672|GO:0006468
Gso1g1843 781 PRINTS Tyrosine kinase catalytic domain signature 624 642 IPR001245 GO:0004672|GO:0006468
Gso1g1843 781 PRINTS Tyrosine kinase catalytic domain signature 671 681 IPR001245 GO:0004672|GO:0006468
Gso1g1843 781 PRINTS Tyrosine kinase catalytic domain signature 690 712 IPR001245 GO:0004672|GO:0006468
Gso1g1843 781 PRINTS Tyrosine kinase catalytic domain signature 734 756 IPR001245 GO:0004672|GO:0006468
Gso1g1843 781 SUPERFAMILY Protein kinase-like (PK-like) 499 770 IPR011009 -
Gso1g1843 781 ProSiteProfiles Protein kinase domain profile. 511 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1843 781 Gene3D Phosphorylase Kinase; domain 1 499 588 - -
Gso1g1843 781 PANTHER SERINE-THREONINE PROTEIN KINASE 31 767 - -
Gso1g1843 781 TIGRFAM sensory_box: PAS domain S-box protein 115 204 IPR000014 -
Gso1g1843 781 Pfam PAS domain 113 204 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1843 Gso-Chr1 55220766 55226084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1843 19 769 MAP Kinase Kinase Kinase AT4G23050 43.846 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gso1g1843 PK_Tyr_Ser-Thr 2.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1843 - - gmx:100813707 1550.8