Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1838 ATGGCCCCCTCATCATCACCATCTTCCAAGAGGCACCCACTGTTCCACGGAATCCGTTGCCGCGGAAGGAAATGGGTCTCCGAAATCCGCGAGCCACGCAAGGCCTCTCGCATATGGCTTGGCACCTTCCCCACGCCGGAGATGGCCGCCGCTGCCTACGACGTGGCCGCGTTGGCCTTAAAAGGCGACGGCGCTGTTCTCAACCTCCCTCACTCGGTTTCAAAGTATCAAATGCCTTTAACCAACTCTCCTGCGGATATTCGCAGTGCTGCCTCCGCTGCAGCCGCAATGATAAAGGCCGAAACTGAAACTGAAGCTACCCACAACCACAACATGAATATTGCATCAATAACTGATAATGAAGCTACCTACACTGCTTCAACTTCGTGGTTTGAAACTGATTTCATCGACGAGGAAGTCATATTTGGTATGCCAAGTTTGCTGGTGGACATGGCCGGGGGAATGCTTCTGTCGCCGCCCAGAATGAGCCCGCCACCGTCCGATAACTCGCTGGAGAAGCAAAATGGTGAAACTTTGTGGAGCTATTTTTGA 552 0.5308 MAPSSSPSSKRHPLFHGIRCRGRKWVSEIREPRKASRIWLGTFPTPEMAAAAYDVAALALKGDGAVLNLPHSVSKYQMPLTNSPADIRSAASAAAAMIKAETETEATHNHNMNIASITDNEATYTASTSWFETDFIDEEVIFGMPSLLVDMAGGMLLSPPRMSPPPSDNSLEKQNGETLWSYF* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1838 183 PANTHER ETHYLENE RESPONSE FACTOR 4 183 - -
Gso1g1838 183 ProSiteProfiles AP2/ERF domain profile. 1 70 IPR001471 GO:0003700|GO:0006355
Gso1g1838 183 MobiDBLite consensus disorder prediction 159 183 - -
Gso1g1838 183 SUPERFAMILY DNA-binding domain 16 72 IPR016177 GO:0003677
Gso1g1838 183 Pfam AP2 domain 16 62 IPR001471 GO:0003700|GO:0006355
Gso1g1838 183 SMART rav1_2 14 76 IPR001471 GO:0003700|GO:0006355
Gso1g1838 183 MobiDBLite consensus disorder prediction 167 183 - -
Gso1g1838 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 183 - -
Gso1g1838 183 Gene3D AP2/ERF domain 15 72 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1838 Gso-Chr1 55161051 55161715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1838 9 182 AP2-EREBP Transcription Factor Family AT5G52020 51.136 2.30e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso1g1838 AP2 1.5e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1838 - - gmx:100811020 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1838 1 55161051 55161715 Gso1g1838 1 55161051 55161715 ECH