Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1837 ATGAACATTTTCAAATCCCCACTGGACCATGATTTGAACTGTGGTGGAATATTCCACGACTCAGCAGAAGCATCTTATTCGTCTGAAACAAGGAGCACCCCCTCAGACGAAGAAGTGATTCTAGCGTCAGCGCGGCCAAAGAAGCGAGCGGGAAGAAGAGTCTTCAAGGAGACAAGGCACCCCGTCTACCGAGGAGTGCGTCGCAGGAACAAGAACAAGTGGGTCTGCGAGATGCGAGTCCCCAACAACAACTCACGGATTTGGCTCGGGACATACCCAACGCCCGAAATGGCCGCACGTGCGCACGACGTTGCGGCGCTCGCGCTCAGGGGAAAGTCCGCGTGCCTCAACTTCGCGGACTCCAGGTGGCGGCTGACGGTGCCGGCGACCACCAACGCGGAGGAGATACGGCGAGCGGCGGGGGAGGCTGCTGAGGCATTTGCAGTTGCAGATGGGGACGACGTTAATATTGACCAACAGCAGAGTGTGATGGCCACGAATGATGATGAAGTTCAAGAGCCTCTCCAGCAGGAGGAGGTTCAAGACTTGCATGATTTGCTTTTGAGTATTGCGAATGAGCCTTTGATGTCTCCTCCACCCTGTGCAAGAGATGGTAGGGACTGGAATGACGTGGACATATTTGATGATGATGAAATCTCACTGTGGAACTTCTCAATTTGA 681 0.5404 MNIFKSPLDHDLNCGGIFHDSAEASYSSETRSTPSDEEVILASARPKKRAGRRVFKETRHPVYRGVRRRNKNKWVCEMRVPNNNSRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSRWRLTVPATTNAEEIRRAAGEAAEAFAVADGDDVNIDQQQSVMATNDDEVQEPLQQEEVQDLHDLLLSIANEPLMSPPPCARDGRDWNDVDIFDDDEISLWNFSI* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1837 226 SUPERFAMILY DNA-binding domain 62 121 IPR016177 GO:0003677
Gso1g1837 226 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Gso1g1837 226 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Gso1g1837 226 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Gso1g1837 226 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 226 - -
Gso1g1837 226 Pfam AP2 domain 61 111 IPR001471 GO:0003700|GO:0006355
Gso1g1837 226 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 226 IPR045277 GO:0003700
Gso1g1837 226 CDD AP2 63 121 IPR001471 GO:0003700|GO:0006355
Gso1g1837 226 Gene3D AP2/ERF domain 62 120 IPR036955 GO:0003700|GO:0006355
Gso1g1837 226 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1837 Gso-Chr1 55149456 55150433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1837 35 224 AP2-EREBP Transcription Factor Family AT1G12610 47.596 6.08e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso1g1837 AP2 3.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1837 - - gmx:100789097 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1837 1 55149456 55150433 Gso1g1837 1 55149456 55150433 ECH