Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1829 ATGGCTCATTTGGTTTATGGTGAAACTCCGTCTTTTGGAGCCTCACACCATGGACAGGCTCAGCAAATTGTTCCATTTCAAACCACTTCGAGCTCCTTAAGGATCCTGCTCTTACATGGCAACTTAGAAATATGGGTCAACGAGGCCAGAAACCTTCCCAACATGGACATGTTCCACAAGAAAACGGGAGAAATGGTTTCCATGTTGTCCCGAAAACTTGGCGGCAAAATCGAAGGTCACATGTCCAAAGCTGGAACCAGTGATCCCTATGTTACGGTATCTGTGGCCGGTGCTGTGATTGCCAGAACTTTTGTCATCAGAAACAGTGAGAACCCTGTTTGGACACAGCATTTCAATGTCCCCGTTGCACATCTTGCTTCTGAAGTTCACTTTGTTGTCAAGGACAGTGATATTGTGGGTTCTCAGATTATTGGAGCAGTGGGAATTCCAGTGGAACATTTATGTAGTGGAACAAGAGTTGAGGGCTTTTTCCCCATCCTTGGTGCTAATGGGAAACCATGTAAGGGTGGATCAGTGTTGAGTTTATCCATTCAGTACACCCCTGTTGAAAAGGTGCCTCTTTATAGCCATGGAGTAGGTGCTGGTCCTGATTATGAAGGGGTCCCTGGTACCTACTTTCCCCTTAGAAAAGGTGGAAAAGTTACACTTTATCAGGATGCTCATGTTGAAGAAGGTTGCCTTCCCAGTTTGAAGGTGGATGGATATGTGAATTACAAGCATGGAAGTTGTTGGCATGACATATTTGATGCAATAAGTGAGGCTCGTCGATTGGTTTACATTGTGGGGTGGTCTGTGTACTACAATGTTAGTCTCATTCGGGATAGTGCTAATGGAAAATCCTACACTTTAGGTGATCTTCTCAAAGCCAAATCACAGGAAGGTGTGAGAGTGCTGCTCCTTGTTTGGGATGATCCCACGTCTAAAAGCATGCTTGGATTTAAAACGGTTGGACTCATGAACACTCATGATGAGGACACTCGCCAGTTTTTCAAGAACTCTTCAGTACGAGTGCTTCTTTGCCCACGAGCTGGTGGAAAAGGACATAGCTGGGTCAAAACGCAGGAAGCTGGAACAATCTATACCCATCATCAGAAGACAGTCATTGTGGATGCTGATGCAGGTCAGAATAAAAGAAAAATCAAAGCTTTCATCGGAGGTCTTGATTTATGTGTGGGCCGATATGATACCCCAAACCATTCCATCTTTAGGACTTTGCAGACAACACACAAAGATGACTATCATAATCCTAACTTTGAGGGGCCAGTTACTGGTTGTCCAAGACAACCATGGCATGATTTGCATTCCCAAGTTGATGGTCCAGCAGCATATGACATTCTCACCAATTTTGAGGAGCGTTGGTTAAGGGCATTAAAAATGCATAGATTTCAAAAGATGAAAAGTTCACATGATGATTCATTACTGAAAATTGATAGAATCCCTGACATTGTTGGCATTGATGAAGTTCCTTGCCAGAATGAAAATAACCGGGAGACTTGGCATGCCCAGGTCTTCCGTTCAATTGATTCTAATTCTGTGAAAGGATTTCCAAAGGAACCACAAGATGCTATAAGAAGGAACTTGGTTTGTGGAAAGAATGTACTGATAGACATGAGCATACATTCAGCGTATGTCAAGGCAATTCGAGCAGCCCAAAAGTTTATCTATATTGAGAACCAATACTTTCTTGGCTCGTCATATAATTGGGATTCTTACAAAGACCTTGGTGCAAACAACTTAATTCCAATGGAAATTGCATTAAAAATAGCCAATAAAATCAAACAACATGAGAGATTTTCTGTGTATATTGTCATTCCTATGTGGCCTGAAGGTGTACCTACAAGTACAGCTACTCAGAGGATTCTCTTTTGGCAGTTCAAAACAATGCAAATGATGTATGAAACAATTTACAAGGCCCTACAGGAGGCTGGGCTTGACAATAAGTATGAACCACAGGACTACTTGAATTTCTTTTGCCTTGGCAATCGTGAGATACCTGACAATGAAAATGTTTTAAATGATGTAAAAACTACTGGAGAAAACAAGCCTCAGGCACTCACTAAAAAGAACCGGAGATTCATGATTTATGTTCATTCAAAAGGAATGATAGTGGATGATGAATATGTGTTACTGGGGTCTGCAAACATAAACCAGCGATCCATGGAAGGCACCAGAGATACAGAGATAGCAATGGGGGCATATCAGCCTAATCATACTTGGGCAAAGAAGCAATCTAAACCTCACGGACAGGTGCATGGTTATAGAATGTCACTATGGAGCGAACATATAGGAGCCGTGGAAGAATGTTTTGAGGAACCAGAGAGCCTTGAATGTGTAAGACGGATAAGGTCATTGAGTGAGTTTAACTGGAGACAATATGCAGCAGAAGAGGTAACTGAAATGAAAAGTCATCTATTAAAATATCCGCTTGAAGTTGATTCAAAGGGCAAAGTGAAGCCTCTTTTTGGCTGTGAGGCATTCCCAGACGTTGGTGGGAACATAAGTGGCACTTTCACACTACTCAAAGAAAATCTCACCATCTGA 2562 0.4215 MAHLVYGETPSFGASHHGQAQQIVPFQTTSSSLRILLLHGNLEIWVNEARNLPNMDMFHKKTGEMVSMLSRKLGGKIEGHMSKAGTSDPYVTVSVAGAVIARTFVIRNSENPVWTQHFNVPVAHLASEVHFVVKDSDIVGSQIIGAVGIPVEHLCSGTRVEGFFPILGANGKPCKGGSVLSLSIQYTPVEKVPLYSHGVGAGPDYEGVPGTYFPLRKGGKVTLYQDAHVEEGCLPSLKVDGYVNYKHGSCWHDIFDAISEARRLVYIVGWSVYYNVSLIRDSANGKSYTLGDLLKAKSQEGVRVLLLVWDDPTSKSMLGFKTVGLMNTHDEDTRQFFKNSSVRVLLCPRAGGKGHSWVKTQEAGTIYTHHQKTVIVDADAGQNKRKIKAFIGGLDLCVGRYDTPNHSIFRTLQTTHKDDYHNPNFEGPVTGCPRQPWHDLHSQVDGPAAYDILTNFEERWLRALKMHRFQKMKSSHDDSLLKIDRIPDIVGIDEVPCQNENNRETWHAQVFRSIDSNSVKGFPKEPQDAIRRNLVCGKNVLIDMSIHSAYVKAIRAAQKFIYIENQYFLGSSYNWDSYKDLGANNLIPMEIALKIANKIKQHERFSVYIVIPMWPEGVPTSTATQRILFWQFKTMQMMYETIYKALQEAGLDNKYEPQDYLNFFCLGNREIPDNENVLNDVKTTGENKPQALTKKNRRFMIYVHSKGMIVDDEYVLLGSANINQRSMEGTRDTEIAMGAYQPNHTWAKKQSKPHGQVHGYRMSLWSEHIGAVEECFEEPESLECVRRIRSLSEFNWRQYAAEEVTEMKSHLLKYPLEVDSKGKVKPLFGCEAFPDVGGNISGTFTLLKENLTI* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1829 853 PIRSF PLD_plant 27 853 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Gso1g1829 853 Pfam Phospholipase D Active site motif 700 726 IPR001736 GO:0003824
Gso1g1829 853 Pfam Phospholipase D Active site motif 366 400 IPR001736 GO:0003824
Gso1g1829 853 ProSiteProfiles C2 domain profile. 22 164 IPR000008 -
Gso1g1829 853 SMART pld_4 365 400 IPR001736 GO:0003824
Gso1g1829 853 SMART pld_4 699 726 IPR001736 GO:0003824
Gso1g1829 853 Gene3D C2 domain 35 177 IPR035892 -
Gso1g1829 853 PANTHER PHOSPHOLIPASE D BETA 1-LIKE 8 853 - -
Gso1g1829 853 SMART C2_3c 41 163 IPR000008 -
Gso1g1829 853 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 699 726 IPR001736 GO:0003824
Gso1g1829 853 CDD C2_plant_PLD 36 187 - -
Gso1g1829 853 Gene3D Endonuclease Chain A 508 754 - -
Gso1g1829 853 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 365 400 IPR001736 GO:0003824
Gso1g1829 853 Pfam C2 domain 40 166 IPR000008 -
Gso1g1829 853 SUPERFAMILY Phospholipase D/nuclease 212 465 - -
Gso1g1829 853 Gene3D Endonuclease Chain A 240 487 - -
Gso1g1829 853 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 38 189 IPR035892 -
Gso1g1829 853 Pfam Phospholipase D C terminal 773 843 IPR024632 -
Gso1g1829 853 SUPERFAMILY Phospholipase D/nuclease 534 784 - -
Gso1g1829 853 PANTHER PHOSPHOLIPASE D 8 853 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1829 Gso-Chr1 55065042 55070588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1829 32 853 Phospholipase D Gene Family (Wang group) AT2G42010 68.042 0.0 1249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1829 K01115 - gmx:100786241 1754.18