Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1828 ATGCAAGAACCAAGCTTGGGATTGATGGGTGAGGTCTCCGGCGATCACCACCGTCAGCTGAAGGCGGAGATAACGACTCATCCGCTGTACGAGCAGCTTCTGGCAGCACACGTGGCATGCCTCCGTGTGGCCACCCCGATCGACCAGCTTCCACTCATCGATGCTCAGTTATCTCAGTCTCACCATCTTCTACGCTCTTATGTCTCACACAACACTCATTCTCTCTCCCCTCATCACCGCCAAGAACTTGACAACTTCCTGGCACAATATTTGATAGTTCTGTGTACTTTCAAAGAACAGCTTCAGCAACATGTAAGAGTCCACGCCGTCGAGGCTGTCATGGCCTGCCGTGATATCGAAAATGCCTTACAAGCTCTAACTGGAGTGAGTTTGGGAGAAGGAACTGGTGCAACAATGTCAGATGATGAAGATGATTTACAAATGGATTTTTCTTTAGATCAATCTAGCGCGGAAGGGCATGACATGATGGGATTTGGTCCATTACTTCCTACAGAATCTGAAAGGTCATTGATGGAAAGAGTTCGCCAGGAACTAAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTCAGGGAAGAAATATTAAGGAAACGTAGAGCTGGGAAATTACCAGGTGACACAACTTCTGTGTTAAAGAACTGGTGGCAGCAACATGCAAAGTGGCCTTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATTAATAATTGGTTCATCAACCAAAGGAAACGCAACTGGCACAGTAACTCTCAATCGGTTACCTCTTTGAAGTCGAAGCGCAAGAGGTAG 846 0.4669 MQEPSLGLMGEVSGDHHRQLKAEITTHPLYEQLLAAHVACLRVATPIDQLPLIDAQLSQSHHLLRSYVSHNTHSLSPHHRQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENALQALTGVSLGEGTGATMSDDEDDLQMDFSLDQSSAEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1828 281 SUPERFAMILY Homeodomain-like 206 271 IPR009057 -
Gso1g1828 281 ProSiteProfiles ELK domain profile. 184 204 IPR005539 GO:0003677
Gso1g1828 281 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 11 281 - -
Gso1g1828 281 Pfam Homeobox KN domain 224 263 IPR008422 GO:0003677|GO:0006355
Gso1g1828 281 SMART KNOX2_2 73 128 IPR005541 GO:0003677|GO:0005634
Gso1g1828 281 SMART HOX_1 206 271 IPR001356 GO:0003677
Gso1g1828 281 ProSiteProfiles 'Homeobox' domain profile. 204 267 IPR001356 GO:0003677
Gso1g1828 281 Gene3D - 203 277 - -
Gso1g1828 281 CDD homeodomain 207 268 IPR001356 GO:0003677
Gso1g1828 281 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 11 281 - -
Gso1g1828 281 Pfam KNOX2 domain 77 127 IPR005541 GO:0003677|GO:0005634
Gso1g1828 281 SMART KNOX1_2 18 62 IPR005540 GO:0003677|GO:0005634
Gso1g1828 281 Pfam KNOX1 domain 20 61 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1828 Gso-Chr1 55056366 55063071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1828 1 280 Homeobox Transcription Factor Family AT1G62990 79.110 5.90e-171 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso1g1828 KNOX2 5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1828 - - gmx:100808872 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1828 1 55056366 55063071 Gso1g1828 1 55056366 55063071 ECH