Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1824 ATGGCCTCCATTCTTCAATTGCTGATGTTTGCTTTTACAATGATGTTCACGTTCATGGGAGAGCGAGCAGTAGCTGGGGGAATATTTCGACCCAGTCAATGGGCTCTTGCCCATGCCACCTTTTATGGTGATGAGACTGCTTCTGCCACTATGGGAGGAGCATGCGGATACGGGAATTTGTTTCAAAATGGTTACGGAACAGATACAGTGGCTTTAAGTTCGACCTTGTTCAACAATGGTTACACGTGTGGGACTTGTTATCAGATAAAATGCTACCAATCCAGTGCATGTTACAAAAATGTGGCCTTCACCACAGTAACTGCCACCAATCTTTGCCCTCCTAATTGGTCTCAACCCTCCAACAATGGTGGCTGGTGCAATCCTCCACGAGTGCATTTTGACATGTCCAAACCCGCCTTCATGAAAATCGCGCAGTGGAAAGCCGGAATCGTCCCAGTTATGTACCGCAGAGTGCCATGCATGAGGAGGGGAGGGCTTCGATTCTCTTTCCAAGGAAATGGGTACTGGCTGTTGGTATACGTGATGAACGTGGGAGGTGGAGGAGACATATCAAGCATGTGGGTGAAAGGAAGCAGAAGTGGATGGATTAGCATGAGCCACAACTGGGGGGCTTCTTATCAAGCATTTGCAACTCTAGGTGGCCAAGCTCTTTCTTTCCGAATTACTTCATACACCACCAGGGAGACTATTATTGCTTGGAATGTTGCTCCTTCCAATTGGAACGTTGGACTAACGTATTCCACCAACGTTAACTTCCGCTAA 783 0.4738 MASILQLLMFAFTMMFTFMGERAVAGGIFRPSQWALAHATFYGDETASATMGGACGYGNLFQNGYGTDTVALSSTLFNNGYTCGTCYQIKCYQSSACYKNVAFTTVTATNLCPPNWSQPSNNGGWCNPPRVHFDMSKPAFMKIAQWKAGIVPVMYRRVPCMRRGGLRFSFQGNGYWLLVYVMNVGGGGDISSMWVKGSRSGWISMSHNWGASYQAFATLGGQALSFRITSYTTRETIIAWNVAPSNWNVGLTYSTNVNFR* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1824 260 SMART dpbb_1 69 155 IPR007112 -
Gso1g1824 260 PANTHER EXPANSIN 7 259 - -
Gso1g1824 260 Gene3D - 166 260 IPR036749 -
Gso1g1824 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Gso1g1824 260 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Gso1g1824 260 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Gso1g1824 260 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Gso1g1824 260 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Gso1g1824 260 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Gso1g1824 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Gso1g1824 260 PANTHER EXPANSIN-A15 7 259 IPR002963 GO:0009664
Gso1g1824 260 SUPERFAMILY Barwin-like endoglucanases 33 183 IPR036908 -
Gso1g1824 260 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Gso1g1824 260 Gene3D - 24 160 IPR036908 -
Gso1g1824 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 255 IPR007117 -
Gso1g1824 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Gso1g1824 260 Pfam Lytic transglycolase 69 155 IPR009009 -
Gso1g1824 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Gso1g1824 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Gso1g1824 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Gso1g1824 260 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Gso1g1824 260 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Gso1g1824 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Gso1g1824 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 165 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1824 Gso-Chr1 55025228 55026935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1824 14 260 Expansin Gene Family AT1G12560 68.826 2.14e-126 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1824 - - gmx:100807807 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1824 1 55025228 55026935 Gso1g1824 1 55025228 55026935 ECH