Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1816 ATGAGAAGACACCGTGAAATCCATCTCTCTCATGCTCTGTTGTCCACCGTTTTCTGTTTGTTTGTGACAGCTTCTGCAGCAACTGAGAAGGAAATTTTGCTTGAATTCAAGGGTAACATCACGGACGATCCACGCGCCAGCTTGAGTTCGTGGGTTTCAAGTGGAAACCCGTGCAATGATTACAACGGTGTTTCTTGTAACTCCGAAGGGTTTGTGGAGAGAATTGTGCTTTGGAACACTAGCTTGGGGGGGGTGTTGTCCTCGTCACTTTCGGGGTTGAAGAGGTTGAGGATATTGGCGTTGTTCGGGAACCGTTTTTCGGGTGGTATTCCAGAAGGGTATGGTGAACTTCACTCGTTGTGGAAGATCAATTTGAGTTCCAATGCTTTGTCTGGTTCGATCCCTGAGTTCATTGGTGATTTTCCTAGCATTCGGTTTCTAGATTTGTCCAAGAATGGCTTCACTGGGGAGATACCTTCGGCTTTGTTTAGGTACTGCTACAAAACCAAGTTCGTTTCTCTTTCTCATAACAACCTTGCTGGTTCAATTCCTGCCTCCTTGGTGAATTGTTCCAACCTTGAAGGGTTTGATTTTTCCTTCAACAACCTTAGCGGGGTTGTCCCTCCGCGGCTTTGTGGCATTCCAAGGTTGTCATATGTGTCTCTGAGAAACAATGCCTTGTCAGGGAGCGTGCAGGAACTCATTTCCACATGCCAAAGTTTGGTACATTTGGATTTTGGTAGTAATAGGTTCACTGATTTTGCTCCATTCCGCGTCCTTGAAATGCAAAATCTTACCTATCTCAATCTATCGTATAACGGGTTTGGAGGACACATTCCTGAGATCAGTGCCTGTAGTGGCAGATTGGAAATCTTTGATGCTTCAGGGAATTCTTTGGATGGGGAGATTCCCCCCAGCATAACTAAATGCAAGAGCCTAAAGCTCTTGGCATTGGAGTTGAATAGGTTGGAGGGGAATATCCCAGTGGATATTCAGGAATTGCGTGGACTAATAGTTATCAAATTGGGTAATAATTTCATTGGTGGAATGATTCCCAGTGGCTTTGGCAACGTTGAGCTTCTTGAGTTGCTGGATTTGCACAATCTAAACCTCGTTGGCCAAATTCCTGATGACATAAGCAATTGCAAGTTTCTTCTTGGGTTGGATTTTTCGGGTAATAAATTGGAAGGTGAAATTCCTCAGACCCTTTACAACTTGACAAACCTGGAATCCCTTAACCTACACCATAACCAGCTTAATGGAAGCATTCCCCCAAGCCTAGGAAACCTATCAAGGATCCAGTATCTAGATCTGTCACATAATTCACTTTCTGGCCCAATCCCTCCTTCCCTTGGAAATTTAAATAACTTGACACATTTTGATCTCTCATTCAATAATCTCTCTGGCCGCATTCCTGATGTTGCAACCATACAGCATTTTGGTGCATCTGCATTTTCCAATAATCCTTTTCTCTGTGGTCCTCCTTTGGATACCCCTTGCAACAGAGCTAGATCGTCTTCAGCTCCTGGGAAGGCTAAAGTTCTAAGCACCTCAGCAATTGTTGCAATTGTTGCTGCAGCTGTAATTCTCACTGGGGTTTGTTTGGTGACCATCATGAATATGAGGGCGCGTGGTAGAAGAAGAAAAGATGATGATCAGATTATGATTGTTGAGAGCACACCTCTTGGATCAACAGAATCAAATGTTATAATTGGAAAGCTGGTTCTCTTCAGCAAAAGTTTACCATCAAAATATGAAGATTGGGAGGCAGGTACCAAAGCATTGCTTGACAAAGAGTCTTTGATAGGTGGTGGATCAATTGGTACAGTCTACCGAACTGATTTTGAAGGTGGCGTCTCAATTGCAGTGAAGAAGCTTGAGACTTTGGGAAGGATCAGAAACCAGGAGGAATTTGAGCATGAACTTGGGCGACTTGGCAACCTTCAACACCCTCATTTAGTTGCTTTTCAAGGTTACTATTGGTCCTCTTCAATGCAGTTGATTCTATCAGAGTTTATCCCAAATGGAAATCTGTATGACAATCTACATGGGTTTGGCTTTCCTGGAACCAGCACTAGTACAGGCAACAGGGAATTATATTGGTCTAGAAGGTTCCAAATTGCAGTGGGAACTGCAAGAGCCCTTGCTTATCTCCACCATGACTGTAGACCTCCAATTCTTCATCTCAACATTAAATCCTCTAACATTCTCCTAGATGACAAGTATGAAGCTAAGTTGTCTGATTATGGATTAGGAAAGTTACTTCCCATTTTGGATAATTATGGTCTGACCAAATTCCACAATTCTGTGGGATATGTTGCACCAGAGTTGGCTCAAGGCCTGAGGCAGAGTGAGAAGTGTGATGTTTACAGTTTTGGAGTCATTCTTTTGGAGCTGGTTACAGGGAGGAAGCCTGTGGAAAGTCCAACCACAAATGAGGTAGTGGTTCTGTGTGAATATGTAAGAGGTTTGTTGGAGACTGGCTCAGCTTCAGATTGCTTTGATAGAAATATACTTGGCTTTGCTGAGAACGAATTGATTCAGGTTATGAGATTGGGGCTAATTTGTACTTCGGAGGATCCTTTAAGGAGACCAAGCATGGCTGAGGTTGTCCAGGTCCTTGAGTCCATTAGAAATGGATTGGAGTCCCAATCCCATTAA 2661 0.434 MRRHREIHLSHALLSTVFCLFVTASAATEKEILLEFKGNITDDPRASLSSWVSSGNPCNDYNGVSCNSEGFVERIVLWNTSLGGVLSSSLSGLKRLRILALFGNRFSGGIPEGYGELHSLWKINLSSNALSGSIPEFIGDFPSIRFLDLSKNGFTGEIPSALFRYCYKTKFVSLSHNNLAGSIPASLVNCSNLEGFDFSFNNLSGVVPPRLCGIPRLSYVSLRNNALSGSVQELISTCQSLVHLDFGSNRFTDFAPFRVLEMQNLTYLNLSYNGFGGHIPEISACSGRLEIFDASGNSLDGEIPPSITKCKSLKLLALELNRLEGNIPVDIQELRGLIVIKLGNNFIGGMIPSGFGNVELLELLDLHNLNLVGQIPDDISNCKFLLGLDFSGNKLEGEIPQTLYNLTNLESLNLHHNQLNGSIPPSLGNLSRIQYLDLSHNSLSGPIPPSLGNLNNLTHFDLSFNNLSGRIPDVATIQHFGASAFSNNPFLCGPPLDTPCNRARSSSAPGKAKVLSTSAIVAIVAAAVILTGVCLVTIMNMRARGRRRKDDDQIMIVESTPLGSTESNVIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGGGSIGTVYRTDFEGGVSIAVKKLETLGRIRNQEEFEHELGRLGNLQHPHLVAFQGYYWSSSMQLILSEFIPNGNLYDNLHGFGFPGTSTSTGNRELYWSRRFQIAVGTARALAYLHHDCRPPILHLNIKSSNILLDDKYEAKLSDYGLGKLLPILDNYGLTKFHNSVGYVAPELAQGLRQSEKCDVYSFGVILLELVTGRKPVESPTTNEVVVLCEYVRGLLETGSASDCFDRNILGFAENELIQVMRLGLICTSEDPLRRPSMAEVVQVLESIRNGLESQSH* 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1816 886 PANTHER - 23 883 - -
Gso1g1816 886 Pfam Leucine Rich repeat 263 276 IPR001611 GO:0005515
Gso1g1816 886 Gene3D Phosphorylase Kinase; domain 1 596 676 - -
Gso1g1816 886 SUPERFAMILY Protein kinase-like (PK-like) 597 875 IPR011009 -
Gso1g1816 886 CDD STKc_IRAK 602 877 - -
Gso1g1816 886 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Gso1g1816 886 ProSiteProfiles Leucine-rich repeat profile. 408 431 IPR001611 GO:0005515
Gso1g1816 886 Pfam Protein kinase domain 598 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1816 886 Pfam Leucine Rich Repeat 433 454 IPR001611 GO:0005515
Gso1g1816 886 Pfam Leucine Rich Repeat 408 430 IPR001611 GO:0005515
Gso1g1816 886 Gene3D Ribonuclease Inhibitor 25 164 IPR032675 -
Gso1g1816 886 PANTHER UNNAMED PRODUCT 23 883 - -
Gso1g1816 886 SUPERFAMILY L domain-like 72 161 - -
Gso1g1816 886 SUPERFAMILY L domain-like 166 492 - -
Gso1g1816 886 SMART LRR_typ_2 117 141 IPR003591 -
Gso1g1816 886 SMART LRR_typ_2 454 478 IPR003591 -
Gso1g1816 886 SMART LRR_typ_2 406 430 IPR003591 -
Gso1g1816 886 SMART LRR_typ_2 262 285 IPR003591 -
Gso1g1816 886 Gene3D Ribonuclease Inhibitor 165 503 IPR032675 -
Gso1g1816 886 Gene3D Transferase(Phosphotransferase) domain 1 677 886 - -
Gso1g1816 886 ProSiteProfiles Protein kinase domain profile. 596 886 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1816 Gso-Chr1 54968191 54972279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1816 25 883 Receptor kinase-like Gene Family AT1G62950 66.246 0.0 1124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Gso1g1816 Pkinase 4.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1816 - - gmx:100805681 1700.64