Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1811 ATGGATCCTATTACAGCACACGGTCATTCTCTTCCCCCTCCTTTCCACGCAGGAAGAGATCTCCACCTCCACCAGCAACAACACCAGTTCCACTCCTTACAAGAAGACGAGCAGAGCGGAAGCAGCGGAGGCCTAAACCTCGCACACAAAAGGGAACACGAAGAAAACAACAACAACAACAGCAGCGATGGCAAAGAAGGTGGAGGTGCTGGCTCCGGCGAAACCGAAATTTCAAGAAGACCTCGCGGAAGACCCGCCGGATCCAAGAACAAGCCCAAACCCCCCATCATCATCACGCGCGACAGCGCCAACGCCCTCAAAACCCACGTCATGGAAGTCGCCGACGGCTGCGACATCGTCGATAGCGTCTCCGCCTTCGCCCGCCGCCGCCAGAGAGGGGTTTGCATCATGAGCGGCACCGGAACGGTCACCAACGTCACCCTGAGGCAACCGGCTTCTTCCGGCGCCGTCGTCACTCTCCACGGAAGGTTCGAGATCTTGTCCCTCGCCGGGTCCTTCCTGCCCCCTCCTGCGCCGCCTGCAGCCTCCGGTTTGACCATATACCTCGCCGGAGGACAAGGCCAAGTCGTCGGAGGAAGCGTGGTTGGCGCACTAATCGCTTCGGGGCCCGTGGTTATCATGTCAGCTTCGTTTAGCAACGCTGCGTATGAGAGGCTTCCTTTGGAAGATGAAGACCCTTCGATGGCGCTTCAGGGAGGTGGTTCGATTGGGTCACCGGGAGGTGGCGGTGGAGGTGGCGGTGGCGTTGGTCAACAGCAGCCATCTCAGCAGCTTATGGGGGATTCCACTGCGCCTCTTTTCCATGGTTTGAATCCCAATCTTCTGAATTCGGTTCAGATGCCGTCCGAGACTTTCTGGGCAACGGGTCGCTCTCCATACTGA 903 0.5847 MDPITAHGHSLPPPFHAGRDLHLHQQQHQFHSLQEDEQSGSSGGLNLAHKREHEENNNNNSSDGKEGGGAGSGETEISRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDIVDSVSAFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEDEDPSMALQGGGSIGSPGGGGGGGGGVGQQQPSQQLMGDSTAPLFHGLNPNLLNSVQMPSETFWATGRSPY* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1811 300 MobiDBLite consensus disorder prediction 232 271 - -
Gso1g1811 300 ProSiteProfiles PPC domain profile profile. 103 240 IPR005175 -
Gso1g1811 300 Pfam Plants and Prokaryotes Conserved (PCC) domain 107 220 IPR005175 -
Gso1g1811 300 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 7 300 - -
Gso1g1811 300 CDD DUF296 107 174 IPR005175 -
Gso1g1811 300 Gene3D - 106 235 - -
Gso1g1811 300 PIRSF ESCAROLA 17 299 IPR014476 GO:0003680
Gso1g1811 300 MobiDBLite consensus disorder prediction 1 97 - -
Gso1g1811 300 SUPERFAMILY AF0104/ALDC/Ptd012-like 103 232 - -
Gso1g1811 300 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 300 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1811 Gso-Chr1 54928440 54930528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1811 9 300 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 59.177 2.27e-83 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1811 - - gmx:100781436 493.426