Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1800 ATGAAAGTTCACTTCTCCGTTCAACTCCTTCTTTCTCTGTTTCTACTGTCTGCATTTCACGTTCCACATATGGTTGTTGGAACTGTGGAGCTTAGAGCTCTGATGGAGTTGAAGTCCTCTCTGGATCCAGAGGGAAAGATCCTTGGCTCGTGGATCAGTGATGGTGATCCATGCAGTGGCTTCTTCGAAGGGGTTGCGTGCAACGAGCATCGCAAAGTGGCTAACATCTCTTTGCAGGGAAAGGGTCTTTCGGGTTGGTTATCTCCAGCACTGGCTGAACTCAAATGCTTGTCAGGGTTATACTTGCACTACAACAACCTTTCTGGTGAGATACCCCCACGCATTTCAAATCTCACTGAACTGGTTGATCTCTATCTCGACGTTAATAGTTTATCTGGAGCTATTCCTCCTGAGATCAGCAACATGGCTAGTCTCCAAGTGTTGCAGTTGGGAGATAACCAGTTGGTGGGGAATATACCTACACAGATGGGTTCCTTAAAGCACCTTAGTACTCTTGCTTTGCAATATAACAAGTTAACTGGTCAAATTCCTCTTAGCTTGGGGAACTTGGAGAAGTTAAGCAGGCTTAATTTGAGTTTCAACAACTTTAGTGGTACTGTTCCAGCAACACTCGCACATATTGAGCATTTGGAAGTTTTAGATATTCAGAACAATTATTTGTCAGGAATTGTTCCTTCGGCATTGAAGAGACTTGGCGAAAGATTCCAAGGTGCAAACAACCCCGGTTTATGTGGGGTTGGGTTTTCTACTTTGAGAGCCTGCAACAAAGATCAAGATTTAAACGTTAACCATATTGATACCTCAGATGGAGACCAACCCGAAAATAGTGATTCTTCAAAGGCGCTCCCGGAGCCTGCATATGTTCAGTCACATTGTGGCCAGACCCATTGTTCAAAATCGCGAAGGTTTCCTCATACTGTCATCACAGCAGGTGTTATAATCGTTGCTCTTGCATTCATATGTGCTGGATTTTTAACATTCTTCAGATACCGCCGTCAAAAGCAAAGGATTAGTAATACATCAAGTTCTTCTTCTGAAGGGAAAGTTAGTCCTGACCAGCCTAAAGAGTTCTACACAAAAAGTCCGTCTGCACTTGTTAATATTGAGTATTATAGTGGATGGGATCCATTGTCTAATGGTCAAAATGCCGATGTTGGTGGATTATGTAATGAGTATCTAAATCAGTTTAGGTTTAATGTGGATGAGGTTGAATCTGCAACACAGTACCTCTCGGAAACCAATTTGCTTGGTAAGAGCAAATTCTCAGCAGTTTATAAAGGAGTTCTCAGAGATGGTTCTCTTGTGGCTATTAGAAGCATTAGCGTGACATGCTGCAAAACTGAGGAAGCTGAATTTGTAAAGGGCTTGAACTTATTAACCTCTCTGACACATGAAAACCTTGTTAGGCTGAGAGGTTTTTGTTGCTCAAGGAGTAGAGGTGAATGTTTCCTTATCTATGACTTTGCCACCATGGGTAACCTGTCTCAATATCTCGACATAGAAGATGGAAGTGGCCATGTGCTTGAGTGGTCCAAGAGAGTCTCTATCATCAAGGGCATTGCAAAGGGCATTGAATATCTTCATAGCAAAGAAGAAAGCAAACCTACAATAGTTCACCAGAATATTTCAGTGGAAAATGTTCTCCTAGACCATCAGTTTAACCCATTGATCATGGATGCTGGACTACCTAAGCTTCTTGCAGATGATGTTGTTTTCTCAGCTCTAAAAGTTAGTGCTGCAATGGGATACTTAGCTCCTGAATACATCACCACAGGACGCTTTACTGAGAAAAGTGACATATACGCATTTGGAGTAATCATTCTTCAAGTTCTATCTGGCAAGACCACAATAGGTAGTTCAATACGGACGGCAGTTGAGTCTTTCAGATTTGATGAATCCGTTGACACAAATCTTAAGGGAAGATATTCTAAATCTGAAGCAGCAACACTTTCAAAGCTTGCAATACAGTGTACTCATGAGCTTCCAGACCAAAGACCAACCATGGTGGATGTGATTCAGGAGCTGAGTGTGTCATCTGCTCATATATAA 2070 0.4208 MKVHFSVQLLLSLFLLSAFHVPHMVVGTVELRALMELKSSLDPEGKILGSWISDGDPCSGFFEGVACNEHRKVANISLQGKGLSGWLSPALAELKCLSGLYLHYNNLSGEIPPRISNLTELVDLYLDVNSLSGAIPPEISNMASLQVLQLGDNQLVGNIPTQMGSLKHLSTLALQYNKLTGQIPLSLGNLEKLSRLNLSFNNFSGTVPATLAHIEHLEVLDIQNNYLSGIVPSALKRLGERFQGANNPGLCGVGFSTLRACNKDQDLNVNHIDTSDGDQPENSDSSKALPEPAYVQSHCGQTHCSKSRRFPHTVITAGVIIVALAFICAGFLTFFRYRRQKQRISNTSSSSSEGKVSPDQPKEFYTKSPSALVNIEYYSGWDPLSNGQNADVGGLCNEYLNQFRFNVDEVESATQYLSETNLLGKSKFSAVYKGVLRDGSLVAIRSISVTCCKTEEAEFVKGLNLLTSLTHENLVRLRGFCCSRSRGECFLIYDFATMGNLSQYLDIEDGSGHVLEWSKRVSIIKGIAKGIEYLHSKEESKPTIVHQNISVENVLLDHQFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIILQVLSGKTTIGSSIRTAVESFRFDESVDTNLKGRYSKSEAATLSKLAIQCTHELPDQRPTMVDVIQELSVSSAHI* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1800 689 Gene3D Ribonuclease Inhibitor 184 248 IPR032675 -
Gso1g1800 689 Pfam Leucine Rich Repeat 216 238 IPR001611 GO:0005515
Gso1g1800 689 MobiDBLite consensus disorder prediction 269 292 - -
Gso1g1800 689 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 1 686 - -
Gso1g1800 689 Gene3D Transferase(Phosphotransferase) domain 1 498 688 - -
Gso1g1800 689 SUPERFAMILY L domain-like 31 237 - -
Gso1g1800 689 MobiDBLite consensus disorder prediction 269 290 - -
Gso1g1800 689 ProSiteProfiles Protein kinase domain profile. 417 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1800 689 SUPERFAMILY Protein kinase-like (PK-like) 398 683 IPR011009 -
Gso1g1800 689 Pfam Protein tyrosine and serine/threonine kinase 420 682 IPR001245 GO:0004672|GO:0006468
Gso1g1800 689 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 686 - -
Gso1g1800 689 Gene3D Phosphorylase Kinase; domain 1 389 495 - -
Gso1g1800 689 Gene3D Ribonuclease Inhibitor 28 183 IPR032675 -
Gso1g1800 689 SMART LRR_typ_2 190 213 IPR003591 -
Gso1g1800 689 SMART LRR_typ_2 214 237 IPR003591 -
Gso1g1800 689 SMART LRR_typ_2 142 166 IPR003591 -
Gso1g1800 689 SMART LRR_typ_2 94 118 IPR003591 -
Gso1g1800 689 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1800 Gso-Chr1 54833749 54837448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1800 9 530 Miscellaneous Gene Families AT4G22730 57.008 0.0 586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Gso1g1800 PK_Tyr_Ser-Thr 1.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1800 - - gmx:100777169 1363.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1800 1 54833749 54837448 Gso1g1800 1 54833749 54837448 ECH