Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso1g1797 | ATGGCAACTACTACACTCATGAAGCTTGCTTTCATGCTTCTCATGAACCTTGTTATCTGCAGCGCAGAATCTTCCATCGGCAGAAAGTCCAATCCTAACCCAGAAGAGTTCGTGAAGTCCTCGTGCAGGGCAACACGGTACCCTGTTCTATGCGTCAAGTCTCTGTTGGCCTACGCAAGCGTGATTCGCCGAAGCGACCGACAACTAGCCACGACCGCTCTGTCGGTAAGCATATCGAGGAGCCGATCCTCCGCATGGTTGGTGAAGAAGATGTTGAAAGCGAGAGGCATGAAGCCTAGAGAATACAGAGCGGTGCAAGACTGCGTGGAGAACATTGGTGACAGCGTGGACCGTCTCAGGCAATCGGTTACGGAGTTGGGGCGGACGGGCGAGGACTTCGTCTGGCACATGAGCAACGTCCTGACTTGGCTCAGCGCTGCCCTCACCGACGACAGCACTTGTCTTGACGGCTTCGCTGGTTCCGCCATGAACGGAAACGTGAAGGCTCTTATAAAGGACAGGATTGTCCACGTTGCTCAAGTCACAAGCAACGCTCTCGCTTTGGTTAACCGCTTTGCCTCAAGACACCCAAGTGCTACTCAAACTCCTTAA | 612 | 0.5343 | MATTTLMKLAFMLLMNLVICSAESSIGRKSNPNPEEFVKSSCRATRYPVLCVKSLLAYASVIRRSDRQLATTALSVSISRSRSSAWLVKKMLKARGMKPREYRAVQDCVENIGDSVDRLRQSVTELGRTGEDFVWHMSNVLTWLSAALTDDSTCLDGFAGSAMNGNVKALIKDRIVHVAQVTSNALALVNRFASRHPSATQTP* | 204 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso1g1797 | 203 | PANTHER | PECTINESTERASE INHIBITOR 9 | 12 | 196 | - | - | |
| Gso1g1797 | 203 | CDD | PMEI-like_3 | 40 | 194 | - | - | |
| Gso1g1797 | 203 | PANTHER | PECTINESTERASE INHIBITOR-LIKE | 12 | 196 | - | - | |
| Gso1g1797 | 203 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 36 | 192 | IPR035513 | - | |
| Gso1g1797 | 203 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 34 | 192 | IPR035513 | - | |
| Gso1g1797 | 203 | SMART | PMEI_2 | 33 | 188 | IPR006501 | GO:0004857 | |
| Gso1g1797 | 203 | Pfam | Plant invertase/pectin methylesterase inhibitor | 37 | 188 | IPR006501 | GO:0004857 | |
| Gso1g1797 | 203 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 9 | 190 | IPR006501 | GO:0004857 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso1g1797 | Gso-Chr1 | 54801707 | 54802616 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso1g1797 | 28 | 189 | Carbohydrate Esterase | AT3G14310 | 34.337 | 1.24e-25 | 101 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso1g1797 | - | - | gmx:100776636 | 389.037 |