Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1784 ATGACTTCTTCTTCACTCTTGGTGTCACTGCAAGTAGCGCTTGCGGTTTTCGCTTGCATATTCCATGCAGCAACAGTGACATGTAAACCCCACCACCGCGACCGTACCTTAAAAATATTCTCTTCTACGAGCAACTCCTCAAAGAGTAGCCACCATTGGATCGGACCCATTGGTCACCGTAAAATCACCGTTGACATTAACGGCGGTGGCCACTACCGGTCCGTCCAAGACGCCGTCAATGCCGTCCCCGACAACAACCGAAGGAATGTCCTTATTCAAATCAACGCCGGATGCTACAAAGAAAAGGTAGTTGTGCCCGTGACGAAGCCGTACATAACTTTTGAGGGCGCGGGTAAAGAAGTGACGGTGATAGAATGGCATGATCGAGCAAGTGACCCTGGTCCTAGCGGACAGCAATTGCGTACTTACAGAACCGCTTCTGTTACTGTTTTTGCCAGCTATTTTTCTGCCAGGAACATCAGCTTCAAGAACACAGCACCTGCACCAATGCCGGGGATGCAGGGATGGCAAGCGGTGGCGTTTCGCATATCCGGCGACAAAGCATACTTCTCCGGATGCGGTTTCTACGGTGCACAAGACACCCTTTGCGACGATGCAGGCAGACATTACTTCAAGGAATGCTACATTGAAGGATCCATCGATTTCATTTTTGGCAATGGCAGGTCCATGTACAAGGATTGCGAGCTGCACTCAATAGCAACGAGGTTCGGTTCCATAGCGGCCCACGATAGGAAACAGCCAGAAGAGAAGACAGGGTTCGCATTCGTACGATGCAAGGTGACAGGAACGGGTCCGCTATATGTGGGACGAGCAATGGGACAGTATTCGAGAATTGTCTACTCCTACACATATTTCGATGATATTGTTGCACATGGCGGTTGGGATGATTGGGACCATGCCCACAATAAGAACAAGACTGTGTTCTTCGGAGTGTACAAGTGTTGGGGACCAGGAGCAGAGGCTGTACGTGGGGTCTCATGGGCCCGAGACTTAGATTTCGAAGCTGCCCATCCATTTATCAGGAAGAGTTTCGTCAATGGGAGACACTGGATCGCGCCATCAGATGCTTAA 1092 0.5027 MTSSSLLVSLQVALAVFACIFHAATVTCKPHHRDRTLKIFSSTSNSSKSSHHWIGPIGHRKITVDINGGGHYRSVQDAVNAVPDNNRRNVLIQINAGCYKEKVVVPVTKPYITFEGAGKEVTVIEWHDRASDPGPSGQQLRTYRTASVTVFASYFSARNISFKNTAPAPMPGMQGWQAVAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAHDRKQPEEKTGFAFVRCKVTGTGPLYVGRAMGQYSRIVYSYTYFDDIVAHGGWDDWDHAHNKNKTVFFGVYKCWGPGAEAVRGVSWARDLDFEAAHPFIRKSFVNGRHWIAPSDA* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1784 363 Gene3D - 58 362 IPR012334 -
Gso1g1784 363 SUPERFAMILY Pectin lyase-like 60 360 IPR011050 -
Gso1g1784 363 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Gso1g1784 363 Pfam Pectinesterase 62 354 IPR000070 GO:0030599|GO:0042545
Gso1g1784 363 PANTHER PECTINESTERASE 68-RELATED 20 362 - -
Gso1g1784 363 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 20 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1784 Gso-Chr1 54633433 54637284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1784 4 363 Carbohydrate Esterase AT5G47500 71.429 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1784 - - gmx:100816190 749.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1784 1 54633433 54637284 Gso1g1784 1 54633433 54637284 ECH