Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1780 ATGGAGCGGTACAAATGCAAGCTCTGCTCCAGAACATTCTCCAATGGCAGAGCCCTCGGTGGCCACATGAAGGCTCACTTAGCCACCCTCCCTCTTCCCCCCCAAAACCAACAACCACCACTTTCTCCCTCTGCTGCTGCTTCCTTCTCTTCTAATTCCTCTTCAGAACAAGAACAAGCCACACACGATGAAAAGTCCCTGATTTATGGGTTAAGAGAGAATCCCAAGAAATGCTTCAGGCTCGCAGATCCCGAGTTTGACACGGGCTCTGTCGTTCAAGACAGGGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCGACGATCCAAGCGAACCCGAAGGCCCGTGAATTTGGAACAAAAAAAGCCCAAACTGAGTTTCATGGAGTCGCCTGAGCCCGTGAGTTCGGTCTCCGACACTTCCCCCGAGGAAGATGTCGCCATGTGTCTCATGATGTTGTCGAGAGACCGATGGAGTAAGAACAACAACATCAACGTTGTTAATGTTAATGATGATGATGTTGTCGAAGAGGAAGAAGAAGAAGAAGAGGAGGAGGGTGGGAGATCAGTACTAGAGATAAAGTTGAGGAGAGTTCGCGGGAAGCACCAGTGTCAGAGCTGCGGGAAGACGTTTCGATCTTCACGCGCATTGGGCAGTCACAGAAGCATTTGCGAAGGTTCGGGTAACGATAGTAAAATCTTCCAATGCCCCTTTTGTTCCAAGGTGTTTGGGTCTGGTCAAGCACTTGGTGGCCACAAGAGATCTCACCTCATGCCTTCTTCTTCCACAACCGCTAATAATGATTCTGTTAGATTGAAAGAGAGCTTCATAGATCTCAACTTGCCAGCTCCGCCCGAAGATGACGACCTTAGTGTTGTTTCTGATGCCTGA 891 0.4972 MERYKCKLCSRTFSNGRALGGHMKAHLATLPLPPQNQQPPLSPSAAASFSSNSSSEQEQATHDEKSLIYGLRENPKKCFRLADPEFDTGSVVQDRESETESKNPTRRRSKRTRRPVNLEQKKPKLSFMESPEPVSSVSDTSPEEDVAMCLMMLSRDRWSKNNNINVVNVNDDDVVEEEEEEEEEEGGRSVLEIKLRRVRGKHQCQSCGKTFRSSRALGSHRSICEGSGNDSKIFQCPFCSKVFGSGQALGGHKRSHLMPSSSTTANNDSVRLKESFIDLNLPAPPEDDDLSVVSDA* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1780 296 MobiDBLite consensus disorder prediction 29 68 - -
Gso1g1780 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 261 IPR013087 -
Gso1g1780 296 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Gso1g1780 296 SUPERFAMILY beta-beta-alpha zinc fingers 202 256 IPR036236 -
Gso1g1780 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 202 231 IPR013087 -
Gso1g1780 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Gso1g1780 296 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 296 IPR044303 GO:0006355
Gso1g1780 296 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 296 - -
Gso1g1780 296 MobiDBLite consensus disorder prediction 89 141 - -
Gso1g1780 296 Pfam C2H2-type zinc finger 3 28 - -
Gso1g1780 296 Pfam C2H2-type zinc finger 202 221 - -
Gso1g1780 296 Pfam C2H2-type zinc finger 234 257 - -
Gso1g1780 296 ProSitePatterns Zinc finger C2H2 type domain signature. 236 256 IPR013087 -
Gso1g1780 296 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Gso1g1780 296 MobiDBLite consensus disorder prediction 41 57 - -
Gso1g1780 296 SMART c2h2final6 202 222 IPR013087 -
Gso1g1780 296 SMART c2h2final6 234 256 IPR013087 -
Gso1g1780 296 SMART c2h2final6 4 26 IPR013087 -
Gso1g1780 296 MobiDBLite consensus disorder prediction 89 105 - -
Gso1g1780 296 Gene3D Classic Zinc Finger 199 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1780 Gso-Chr1 54597238 54598478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1780 1 293 C2H2 Transcription Factor Family AT3G60580 37.651 1.05e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso1g1780 zf-C2H2_6 7.9e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1780 - - gmx:100815124 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1780 1 54597238 54598478 Gso11g0291 11 2447480 2448810 GST
Gso1g1780 1 54597238 54598478 Gso5g0507 5 5554481 5556003 PCT
Gso1g1780 1 54597238 54598478 Gso17g1202 17 11557489 11558743 PCT
Gso5g0507 5 5554481 5556003 Gso1g1780 1 54597238 54598478 PCT
Gso17g1202 17 11557489 11558743 Gso1g1780 1 54597238 54598478 PCT