Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1773 ATGGTGAAGATAGCTCTTGGTACTTTGGATGACTCTTTTAGCGCTGCCTCTCTTAAGGCTTATTTCGCAGAGTTCCACGCAACTCTGATTTTCGTGTTCGCTGGTGTTGGATCAGCCATCGCTTACAACGAGCTTACAAAAGATGCAGCCTTGGATCCAACGGGGCTGGTGGCAGTAGCTGTGGCACATGCATTTGCACTGTTTGTAGGTGTCTCCGTCGCCGCCAACATCTCAGGTGGCCATTTGAACCCAGCTGTCACTTTTGGATTGGCCATTGGAGGCAACATCACTCTCATTACTGGTTTCTTATACTGGATTGCCCAATTGTTGGGTTCTATAGTCGCATGCCTCCTCCTCAATTTGATCACCGCTAAGAGCATTCCAAGCCACTCGCCGGCTAATGGTGTGAACGATTTGCAAGCTGTAGTGTTTGAGATTGTTATCACATTTGGGTTGGTTTACACTGTGTATGCAACTGCAGTAGACCCAAAGAAGGGGTCATTGGGTATCATTGCACCCATTGCTATTGGGTTCGTTGTGGGTGCCAACATCTTAGCAGCAGGCCCATTCAGCGGCGGTTCAATGAACCCAGCTCGCTCATTCGGCCCAGCTGTGGTCAGTGGAGACTTGGCTGCTAACTGGATCTACTGGGTTGGCCCATTGATTGGAGGAGGTTTGGCTGGCTTGATTTATGGAGACGTCTTCATTGGTTCCTATGCCCCTGTCCCAGCCTCTGAAACCTACCCTTGA 750 0.4987 MVKIALGTLDDSFSAASLKAYFAEFHATLIFVFAGVGSAIAYNELTKDAALDPTGLVAVAVAHAFALFVGVSVAANISGGHLNPAVTFGLAIGGNITLITGFLYWIAQLLGSIVACLLLNLITAKSIPSHSPANGVNDLQAVVFEIVITFGLVYTVYATAVDPKKGSLGIIAPIAIGFVVGANILAAGPFSGGSMNPARSFGPAVVSGDLAANWIYWVGPLIGGGLAGLIYGDVFIGSYAPVPASETYP* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1773 249 CDD MIP 19 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso1g1773 249 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso1g1773 249 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso1g1773 249 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso1g1773 249 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso1g1773 249 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso1g1773 249 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso1g1773 249 PANTHER AQUAPORIN-8 1 249 IPR034294 -
Gso1g1773 249 PANTHER AQUAPORIN TIP2-2-RELATED 1 249 - -
Gso1g1773 249 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
Gso1g1773 249 TIGRFAM MIP: MIP family channel proteins 23 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso1g1773 249 Pfam Major intrinsic protein 14 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso1g1773 249 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Gso1g1773 249 SUPERFAMILY Aquaporin-like 16 237 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1773 Gso-Chr1 54523949 54526494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1773 1 246 Major Intrinsic Protein MIP AT5G47450 76.923 1.07e-132 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1773 K09873 - gmx:100527338 469.159