Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1767 ATGGCACCCACCAAGAATGATGAAACTGCTAAGAAAACAAACAACAGAGGAGCATGGACCGCGGAGGAAGATCAGAAGCTAGCCCAGTGCATTGAAATTCACGGTGCAAAGAGATGGAAAACTGTTGCAATTAAATCAGGTCTAAACAGATGTGGAAAAAGTTGTAGGCTAAGATGGTTAAACTATCTGAGACCCAATATCAAGAGGGGCAACATATCAGTTGAAGAAGAGGATTTGATTATTAGGCTTCACAAACTGCTGGGAAACAGGTGGTCATTGATAGCTAAGAGGCTTCCAGGACGAACCGACAACGAAATTAAGAACTACTGGAATACTTGTTTGTGCAAAAAACTTAATCGCACAAAGGTGAAGCCTGAAACTTCAACAGCACAAGCAACACATACGACTCGGAGTACTGAGGAAAGAGCAGCGGTAGAGAATAAAGAGCGCATTGATGATGGGAGTGGGGACTCAGAAGTTAACTTTGATGTGAACGAATTCTTCAACTTCTCCATTGAAGGACCCTTTGCGTTAGATTGGATGATCTAG 549 0.4262 MAPTKNDETAKKTNNRGAWTAEEDQKLAQCIEIHGAKRWKTVAIKSGLNRCGKSCRLRWLNYLRPNIKRGNISVEEEDLIIRLHKLLGNRWSLIAKRLPGRTDNEIKNYWNTCLCKKLNRTKVKPETSTAQATHTTRSTEERAAVENKERIDDGSGDSEVNFDVNEFFNFSIEGPFALDWMI* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1767 182 SMART sant 15 65 IPR001005 -
Gso1g1767 182 SMART sant 68 116 IPR001005 -
Gso1g1767 182 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Gso1g1767 182 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Gso1g1767 182 MobiDBLite consensus disorder prediction 139 157 - -
Gso1g1767 182 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Gso1g1767 182 MobiDBLite consensus disorder prediction 125 157 - -
Gso1g1767 182 CDD SANT 73 112 IPR001005 -
Gso1g1767 182 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Gso1g1767 182 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Gso1g1767 182 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 181 - -
Gso1g1767 182 CDD SANT 18 63 IPR001005 -
Gso1g1767 182 SUPERFAMILY Homeodomain-like 15 110 IPR009057 -
Gso1g1767 182 Gene3D - 73 147 - -
Gso1g1767 182 Gene3D - 8 69 - -
Gso1g1767 182 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 4 181 - -
Gso1g1767 182 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1767 Gso-Chr1 54482439 54483434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1767 16 177 MYB Transcription Factor Family AT3G13540 46.961 3.76e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso1g1767 Myb_DNA-binding 4.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1767 K09422 - gmx:100791381 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1767 1 54482439 54483434 Gso11g0304 11 2559479 2561079 GST
Gso1g1767 1 54482439 54483434 Gso5g0524 5 5772079 5774477 PCT
Gso1g1767 1 54482439 54483434 Gso17g1213 17 11673350 11675539 PCT
Gso5g0524 5 5772079 5774477 Gso1g1767 1 54482439 54483434 PCT
Gso17g1213 17 11673350 11675539 Gso1g1767 1 54482439 54483434 PCT