Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1764 ATGACGGTTCAAAAGGAAGATTTGGGCTTGAGTCTAAGTTTGAGCTTCCCTCTCCTCTCCTCTTCTCCTTCCAGCCACAACCCTCAGAAACCCTCTTGGAACGACCCTATTTTCACTTCTTCAGGTGAAGCTGGATCATTCCTCCGCGGAATCGATGTGAACCGTTTACCTTCTGTGGTTGATTGCGAAGAGGAAGCAGGTGTTTCATCTCCAAACAGCACGGTTTCTAGCGTCAGTGGAAAGCGCAGCGAGAGGGAAACCAATGGAGAAGAAAACGACACAGACAGAGCTTGTTCCAGAGGCATCATCAGCGACGAAGAAGATGCTGAAACCTCTAGAAAGAAACTTAGACTCTCCAAAGATCAGTCAATTGTCCTGGAAGAGAGCTTCAAAGAACACAACACTCTTAACCCCAAGCAAAAGTTGGCACTGGCGAAACAGCTGGGTCTTCGAGCGAGACAAGTGGAGGTGTGGTTCCAGAACAGAAGGGCAAGGACGAAGCTGAAGCAAACGGAGGTTGACTGCGAGTTTTTGAAAAGGTGCTGCGAGAATCTGACGGAGGAAAACAGGAGGTTGCAGAAGGAAGTGCAAGAGCTTAGAGCACTGAAACTTTCCCCGCAGTTCTACATGCACATGACCCCACCCACCACCCTCACCATGTGCCCCTCGTGTGAGCGTGTCGCGGTTCCCCCCTCCTCTGCCGTTGATCCTGCCACGCGTCACCATCACGTGCCTCCATCTCACCCCCGGGCCTTCCCCATTGGCCCATGGGCCAGGCCCTTCGATGCCCTCCGTCCCAGATCTTAG 807 0.5254 MTVQKEDLGLSLSLSFPLLSSSPSSHNPQKPSWNDPIFTSSGEAGSFLRGIDVNRLPSVVDCEEEAGVSSPNSTVSSVSGKRSERETNGEENDTDRACSRGIISDEEDAETSRKKLRLSKDQSIVLEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSSAVDPATRHHHVPPSHPRAFPIGPWARPFDALRPRS* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1764 268 Pfam Homeodomain 113 167 IPR001356 GO:0003677
Gso1g1764 268 PRINTS Lambda-repressor HTH signature 140 149 IPR000047 GO:0003677
Gso1g1764 268 PRINTS Lambda-repressor HTH signature 149 165 IPR000047 GO:0003677
Gso1g1764 268 SMART halz 169 212 IPR003106 GO:0006355|GO:0043565
Gso1g1764 268 SUPERFAMILY Homeodomain-like 107 170 IPR009057 -
Gso1g1764 268 Pfam HD-ZIP protein N terminus 4 86 IPR006712 GO:0005634
Gso1g1764 268 MobiDBLite consensus disorder prediction 83 114 - -
Gso1g1764 268 PANTHER - 2 259 - -
Gso1g1764 268 MobiDBLite consensus disorder prediction 62 114 - -
Gso1g1764 268 CDD homeodomain 113 170 IPR001356 GO:0003677
Gso1g1764 268 Pfam Homeobox associated leucine zipper 169 203 IPR003106 GO:0006355|GO:0043565
Gso1g1764 268 ProSiteProfiles 'Homeobox' domain profile. 109 169 IPR001356 GO:0003677
Gso1g1764 268 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 259 - -
Gso1g1764 268 MobiDBLite consensus disorder prediction 16 39 - -
Gso1g1764 268 SMART HOX_1 111 173 IPR001356 GO:0003677
Gso1g1764 268 Coils Coil 168 205 - -
Gso1g1764 268 MobiDBLite consensus disorder prediction 67 82 - -
Gso1g1764 268 ProSitePatterns 'Homeobox' domain signature. 144 167 IPR017970 GO:0000981|GO:0006355
Gso1g1764 268 Gene3D - 117 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1764 Gso-Chr1 54458963 54460808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1764 1 268 Homeobox Transcription Factor Family AT5G47370 60.403 3.61e-105 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso1g1764 HD-ZIP_N 1.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1764 K09338 - gmx:547858 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1764 1 54458963 54460808 Gso11g0310 11 2610865 2612823 GST
Gso1g1764 1 54458963 54460808 Gso17g1218 17 11831555 11833755 PCT
Gso17g1218 17 11831555 11833755 Gso1g1764 1 54458963 54460808 PCT