Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1760 ATGGCAAACTCTCTTGAAGTTTCTGCTCTCAATCGCATAAAACTGCATCTTCTAGGAGAACTCTCTCCCCTTCCACTCACAACCTCCTCTCAATCTAGCTCCATCTGTTCCCAATCTTCATGTTCTGACTCATCCGCCACACTTGACCAAATCTTCTCCGAATTCCTCTATTTCCCAACTTCTTCCTCTGAAAACCACTTTTCTGCATTGGAGTTTGAGGCAAAACCCGAAATAATTTACCTCGAAACCCCCAACCCACAATTGGAATTCACGTCTCTAACCACACAGGACAGTAAGAAACCTCAATCTAGTCGAAAGCCGTCGCTGCAAATCTCTCTCCCCAAGAAAACAGAGTGGATCCAATTCGGAGATCCCGAGGTTACTGAAACGGTTTCGCAGAGTAATCCAAACGCGGAAGAGAAGAAGCACTACAGAGGAGTGCGACAGAGACCTTGGGGGAAGTTTGCGGCGGAGATCCGGGACCCGAACAAGCGCGGCTCCAGGGTGTGGCTCGGGACGTTCGACACGGCTATCGAAGCCGCCAAAGCCTACGACCGAGCCGCGTTTAGGCTTCGCGGCTCCAAAGCCATCCTCAACTTCCCCCTCGAAGCCGGTGCCGATGACCGCAAACGCCAAAGGGAAGAGCAAGAGGAGGAGCCCGCGGTGGAAGTCGTCAAGAGGGTAAAAGTAGAGGAATCTGACGTTAGTCGTATTAAGGAGACTCCGTTAACGCCGTCTAGTTGGTTAGGGTTCTGGGGTGGTGATTCTAACGGAATCTTCACCGTGCCGCCCTTGTCACCGTTATCTCCCCACCCGGCGTTGGGTTTTCCACAGCTTATGGTTGTGTGA 849 0.5183 MANSLEVSALNRIKLHLLGELSPLPLTTSSQSSSICSQSSCSDSSATLDQIFSEFLYFPTSSSENHFSALEFEAKPEIIYLETPNPQLEFTSLTTQDSKKPQSSRKPSLQISLPKKTEWIQFGDPEVTETVSQSNPNAEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFRLRGSKAILNFPLEAGADDRKRQREEQEEEPAVEVVKRVKVEESDVSRIKETPLTPSSWLGFWGGDSNGIFTVPPLSPLSPHPALGFPQLMVV* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1760 282 MobiDBLite consensus disorder prediction 124 146 - -
Gso1g1760 282 Pfam AP2 domain 143 193 IPR001471 GO:0003700|GO:0006355
Gso1g1760 282 SUPERFAMILY DNA-binding domain 143 202 IPR016177 GO:0003677
Gso1g1760 282 PRINTS Ethylene responsive element binding protein signature 144 155 IPR001471 GO:0003700|GO:0006355
Gso1g1760 282 PRINTS Ethylene responsive element binding protein signature 183 203 IPR001471 GO:0003700|GO:0006355
Gso1g1760 282 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 3 267 - -
Gso1g1760 282 CDD AP2 142 201 IPR001471 GO:0003700|GO:0006355
Gso1g1760 282 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 267 - -
Gso1g1760 282 SMART rav1_2 143 207 IPR001471 GO:0003700|GO:0006355
Gso1g1760 282 ProSiteProfiles AP2/ERF domain profile. 143 201 IPR001471 GO:0003700|GO:0006355
Gso1g1760 282 Gene3D AP2/ERF domain 142 203 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1760 Gso-Chr1 54411265 54412286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1760 1 282 AP2-EREBP Transcription Factor Family AT5G47230 47.452 1.49e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso1g1760 AP2 5.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1760 K09286 - gmx:100808173 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1760 1 54411265 54412286 Gso11g0315 11 2648429 2649420 GST