Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1746 ATGGCAGCACCAGTCAGTAATGGTCATTCTGAAGAAGGAAGAAATGAGAAGTCATTGATGGAAAATGGGGAATACACTTTCTTCGCTAGGTCCATGTATAAGCGGCGGAAAGTCTCTGCTGTTCGTGATTTCCCAGATGGATGTGGACCATTTGCTTTGAGGATTGATCCAGTGTTAAACGTAAATATTGTGGGTTGTGGTTCAACTAATGGTACAATTATTGAGGATAAGAATGGTGAACATTTAGGGGATGATACTGTTAAAACTTCCAACTGTGAAAATGATGGCAGTCATTCTGAAGTAAAAGATTCACTTCTCACTGAAACTCTTGGTCAAACAACTGACAGTGGTTTGAATATGGAAAACCCTGTAGTCTCATCTCCTCAAGTGAATGGGTCTACTGCAGAACATGAACCTGCAAAAGTGACTATTGGCCAAACAATTGAGTCTGGTTTGAATAAGGAAAACCCTGTTGTCTCATCTCATAAAATGGATGGACTTACTGCAGAAGAGGAAGCTGCAAAAGTGACTGTTGAACAAACAATTGACCGTGTTTTGAACAAGGAAAACCCCGTGGTCTCATCTCATCAAGTGGATGGGCCTACTGCAGAAGACGAGTCTGTCAAAGTGCCATTAGTGGACATAGAAATTCTGAATGCAGAGTTTGCAAGAACTGCAAACACTGTAAAATGTGACTCCTCTTATATGTTGAAGTCATCTTCTCAAGTGGGTGAAGTGGTTATGTCAGGTGGTTTAAAACCCTTATTGCCCAATGTCAATATATCTGGTTCTAGTGCTTGCATGGTGGAGCCTGTAACTAGAAGGTATCTTCCTCGAAGAAAAGTTTCAGCTCTCAGAGACTTCCCAGCTTTATGTGGACGCAATGCTCCACATCTCAGTAAGGACAAGGATGTGTGTCTAGAGGGGATCTCTTCTTTAAATAACAAGAAAGCGTGTCAACAGAACCTGGCCTTAGATGACAACAATCCATTGAAAGAAGTAGGAGCCATGGCTGTAGATCCATTGAAAGAAGTAGGACCCGCTGATGTAAAAGAAATTAAAAGTAACATCCAAGATGAATATGGTTACAAGAGAAAGCTTGTGGACATCGTCCAAACTGATTCTGAAAGTAATGCTGCAAAGAGAGTGAAGAAGCCACTGGAAATCAAGAGAGACAAGCACTTTACACTTCCTGAAGAAAGTAATCATCATGTTAAAATAAATTCCAAGGCAGAGGTAAAAGAGCAAAATAGGGAAGAGACAAAGCCTTTGGATCTATCTCATTCTAAGCATAAGTTGAAAGGGAATTTCAATGGATCCCGGGTCTCATCAGAGAGGAAAGTAGTACTAGGTTTGATGGCTGAATCAGAATGTCCTTGGAGGTCTGACAAAGGTTCCTCAAAATTTAAGTTCGGTGATGCTAAAAATGAAGGCAAGAAAAAGAAAGTAACTGTTGCATTGCCTGACAGGTCTAAAACAGCTATCAAGAGTAAAGGTGCACAAAATTATTCTAGGCAGAAGCCTTTCAAAAAGAAAAAAGGAAATGCTACTTCTGAAGGTATGAGTGAATTAGTAATTTGCGAAAAGAAGGATAGTCTCGATTCATATGAAAATAATGAAGACCTTCAAATTGTTCTGAAATCACATGAGTTCAATGTAAATGTTACTCCTTCTCATTCTAATTTCACTGGTGATGAGGACGACTCAAATGTGACCCGGAAAAAAGTGAGGAAAACTTTACGGTTGTTTCAAGTGGTTTTCAGAAAGCTTTTACAGGAAGTAGAATCAAAGTTAAGTGAGCGAGCAAATAGTAAAAGAGTTGATTTAATTGCTGCAAAGATCCTTAAGGAGAATGGACATTATGTTAACTCAGGCAAGCAGATACTGGGTGATGTCCCCGGGGTTGAAGTTGGTGATGAATTTCAATACAGGGTGGAGCTTAATATAGTTGGCCTTCATCGTCAGATTCAGGGTGGCATAGATTATGTGAAGCAAAATGGTAAGATTCTTGCAACTAGTATTGTTGCGTCAGGGGCTTATGCTGATGATTTGGATAATTCAGATGGCTTGATATATACAGGGCAGGGTGGGAATGTGATGAACACTGATAAAGAACCTGAAGACCAGAAGCTTGAGCGGGGCAATCTTGCTCTGAAGAACAGTATTGAGGAAAAGAACAGTGTTAGGGTGATACGTGGCTCTGAATCAATGGATGGAAAGTGCAGGATATATGTTTATGATGGACTGTATGTGGTTGAGTCTTGTTGGCAGGATGTGGGACCACATGGGAAGCTGGTTTATAAGTTTCGACTGCGAAGAATCCTTGGTCAACCAGAGCTTGCTTTGAAGGAAGTGAAGAAATCTAAAAAGTTCAAAACAAGAGAAGGTGTATGTGTTGATGATATTTCTTATGGAAAAGAACGTATTCCGATATGTGCTGTGAACACCATAGATGATGAAAACCCCCCTCCGTTTAATTACATAACTAGCATGATATACCCCAATTGCCATGTCCTTCCTGCAGAAGGATGTGATTGTACTAATGGATGCTCCGATTTGGAGAAATGTTCATGTGTAGTGAAAAATGGGGGAGAGATTCCATTCAATCACAATGAGGCTATTGTACAAGCAAAGCCTCTGGTCTATGAGTGTGGACCTACCTGTAAATGTCCTTCAACATGCCATAATAGAGTCAGCCAACTTGGCATAAAGTTTCAACTTGAAATATTTAAAACCGATACAAGGGGATGGGGTGTGAGATCCCTGAATTCAATCCCATCAGGAAGTTTTATATGTGAATATATAGGGGAGCTTCTTGAAGACAAGGAAGCTGAACAAAGAACCGGTAATGATGAGTATCTTTTTGATATTGGAAATAACTATAGCAACAGTACTCTTTGGGATGATCTTTCGACTCTCACGACTCTCATGCCTGATGCACACACAGCTTCTTGTGAAGTTGTGAAGGATGGTGGTTTCACCATTGACGCTGCTCAGTTTGGTAATTTGGGGAGATTCATCAACCATAGCTGCTCCCCTAATCTTATTGCTCAGAATGTCCTTTATGATCACCATGACACCAGGATGCCTCACATAATGTTCTTTGCTGCTGATAACATTCCTCCCTTGCAAGAGCTGACTTATGATTACAATTATGAAATAGATCAAGTTCGTGATTCTGATGGCAATATAAAAAAGAAGTATTGCTATTGTGGTTCTGTGGATTGTACTGGCAGGATGTATTGA 3246 0.4023 MAAPVSNGHSEEGRNEKSLMENGEYTFFARSMYKRRKVSAVRDFPDGCGPFALRIDPVLNVNIVGCGSTNGTIIEDKNGEHLGDDTVKTSNCENDGSHSEVKDSLLTETLGQTTDSGLNMENPVVSSPQVNGSTAEHEPAKVTIGQTIESGLNKENPVVSSHKMDGLTAEEEAAKVTVEQTIDRVLNKENPVVSSHQVDGPTAEDESVKVPLVDIEILNAEFARTANTVKCDSSYMLKSSSQVGEVVMSGGLKPLLPNVNISGSSACMVEPVTRRYLPRRKVSALRDFPALCGRNAPHLSKDKDVCLEGISSLNNKKACQQNLALDDNNPLKEVGAMAVDPLKEVGPADVKEIKSNIQDEYGYKRKLVDIVQTDSESNAAKRVKKPLEIKRDKHFTLPEESNHHVKINSKAEVKEQNREETKPLDLSHSKHKLKGNFNGSRVSSERKVVLGLMAESECPWRSDKGSSKFKFGDAKNEGKKKKVTVALPDRSKTAIKSKGAQNYSRQKPFKKKKGNATSEGMSELVICEKKDSLDSYENNEDLQIVLKSHEFNVNVTPSHSNFTGDEDDSNVTRKKVRKTLRLFQVVFRKLLQEVESKLSERANSKRVDLIAAKILKENGHYVNSGKQILGDVPGVEVGDEFQYRVELNIVGLHRQIQGGIDYVKQNGKILATSIVASGAYADDLDNSDGLIYTGQGGNVMNTDKEPEDQKLERGNLALKNSIEEKNSVRVIRGSESMDGKCRIYVYDGLYVVESCWQDVGPHGKLVYKFRLRRILGQPELALKEVKKSKKFKTREGVCVDDISYGKERIPICAVNTIDDENPPPFNYITSMIYPNCHVLPAEGCDCTNGCSDLEKCSCVVKNGGEIPFNHNEAIVQAKPLVYECGPTCKCPSTCHNRVSQLGIKFQLEIFKTDTRGWGVRSLNSIPSGSFICEYIGELLEDKEAEQRTGNDEYLFDIGNNYSNSTLWDDLSTLTTLMPDAHTASCEVVKDGGFTIDAAQFGNLGRFINHSCSPNLIAQNVLYDHHDTRMPHIMFFAADNIPPLQELTYDYNYEIDQVRDSDGNIKKKYCYCGSVDCTGRMY* 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1746 1081 SMART preset_2 799 889 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso1g1746 1081 Gene3D - 612 793 IPR036987 -
Gso1g1746 1081 ProSiteProfiles YDG domain profile. 630 773 IPR003105 -
Gso1g1746 1081 CDD SET_AtSUVH-like 823 1052 - -
Gso1g1746 1081 MobiDBLite consensus disorder prediction 411 438 - -
Gso1g1746 1081 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 87 1081 IPR025794 GO:0016571
Gso1g1746 1081 SUPERFAMILY PUA domain-like 612 786 IPR015947 -
Gso1g1746 1081 SMART G9a_1 625 777 IPR003105 -
Gso1g1746 1081 MobiDBLite consensus disorder prediction 496 515 - -
Gso1g1746 1081 Pfam SAD/SRA domain 629 777 IPR003105 -
Gso1g1746 1081 ProSiteProfiles Pre-SET domain profile. 842 902 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso1g1746 1081 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6-LIKE ISOFORM X1 501 1080 - -
Gso1g1746 1081 Pfam SET domain 916 1051 IPR001214 GO:0005515
Gso1g1746 1081 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 501 1080 - -
Gso1g1746 1081 SMART set_7 905 1057 IPR001214 GO:0005515
Gso1g1746 1081 SUPERFAMILY SET domain 789 1057 IPR046341 -
Gso1g1746 1081 ProSiteProfiles SET domain profile. 905 1051 IPR001214 GO:0005515
Gso1g1746 1081 ProSiteProfiles Post-SET domain profile. 1065 1081 IPR003616 -
Gso1g1746 1081 MobiDBLite consensus disorder prediction 113 136 - -
Gso1g1746 1081 MobiDBLite consensus disorder prediction 411 432 - -
Gso1g1746 1081 Gene3D SET domain 794 1081 IPR046341 -
Gso1g1746 1081 Pfam Pre-SET motif 802 897 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1746 Gso-Chr1 54275186 54281059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1746 567 1078 Su(var)3-9 homologs AT5G04940 40.678 5.47e-118 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso1g1746 SAD_SRA 3.2e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1746 K11420 - gmx:100803378 2170.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1746 1 54275186 54281059 Gso11g0328 11 2757925 2762812 GST