Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1745 ATGGAACTTAATTTTAAGTACCAACTTAGCCTTTTCTGTGTCACACTGCTCTTACCTGCCCTGTGTACCTCTCAAGACTCTTTTACGTGCTCCAGAGCAACCTATTATGGTAGCCCAGATTGTTATGGAAATCCAAGGGGAGCTTGTGGCTTTGGAGAATATGGAAAAACGGTAAACGATGGTAGTGTCGCAGGCGTGTCTTGGCTATGGAAGAATGGATCTGGCTGTGGAGCATGTTATCAGGTTAGGTGCAAAATACCACAATTCTGCGATGAGAATGGAGCATACGTGGTGGTTACAGATTATGGCGAGGGAGACAGAACAGACTTTATTATGAGTCCACGTGCCTACTCAAGATTGGGGAGAAATGCAGATGCATCTGCAGAACTATTCAAATACGGTGTGATGGATGTAGAATACAGAAGGGTACCCTGTAGATACGGTGGCTATAACCTCTTGGTTAAGGTCCATGAACACAGCAGAAACCCTCACTACTTAGCCATTGTCATTCTCTATCTTGGTGGAACTTACGACGTAACTGCTGTTGAATTGTGGCAGGAAGATTGCCAAGAGTGGAGGCGAATGCGCAGGGCATTTGGGACTGTGTTTGACGCTGAGAACCCTCCAAGGGGTGACATAAAGTTGAGGTTCCAATTGAGTGGTAATGCAGAGAAGTATTGGGTGCAATCCGAGAATGTTATCTCTAGTGATTGGGAGGGTGGAGCTGTCTTTGACTCCGAAATTCAGCTTGGTTAA 756 0.4563 MELNFKYQLSLFCVTLLLPALCTSQDSFTCSRATYYGSPDCYGNPRGACGFGEYGKTVNDGSVAGVSWLWKNGSGCGACYQVRCKIPQFCDENGAYVVVTDYGEGDRTDFIMSPRAYSRLGRNADASAELFKYGVMDVEYRRVPCRYGGYNLLVKVHEHSRNPHYLAIVILYLGGTYDVTAVELWQEDCQEWRRMRRAFGTVFDAENPPRGDIKLRFQLSGNAEKYWVQSENVISSDWEGGAVFDSEIQLG* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1745 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Gso1g1745 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 246 IPR007117 -
Gso1g1745 251 PANTHER EXPANSIN-B3 4 250 - -
Gso1g1745 251 Pfam Lytic transglycolase 63 140 IPR009009 -
Gso1g1745 251 Pfam Expansin C-terminal domain 154 234 IPR007117 -
Gso1g1745 251 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 250 - -
Gso1g1745 251 SUPERFAMILY PHL pollen allergen 152 246 IPR036749 -
Gso1g1745 251 Gene3D - 19 145 IPR036908 -
Gso1g1745 251 Gene3D - 146 247 IPR036749 -
Gso1g1745 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Gso1g1745 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Gso1g1745 251 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Gso1g1745 251 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Gso1g1745 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Gso1g1745 251 SUPERFAMILY Barwin-like endoglucanases 14 149 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1745 Gso-Chr1 54270842 54273486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1745 9 250 Expansin Gene Family AT4G17030 61.885 2.48e-112 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1745 - - gmx:100802855 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1745 1 54270842 54273486 Gso11g0329 11 2764906 2767261 GST
Gso1g1745 1 54270842 54273486 Gso5g0557 5 6434464 6436746 PCT
Gso1g1745 1 54270842 54273486 Gso17g1243 17 12149773 12152416 PCT
Gso5g0557 5 6434464 6436746 Gso1g1745 1 54270842 54273486 PCT
Gso17g1243 17 12149773 12152416 Gso1g1745 1 54270842 54273486 PCT