Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1742 ATGAATCCATGGAACATGAGAACTTCCAAGTTACTCTCTCAACAACTTGCTTATCCTCCTTATCGCTTGGTAGAAGAGATTCCAAACATGGGAAATTCCAGTTGTGTGAGCAAGGAGCCAAGAGGTTCACAGATGACAATCTTTTATGGTGGCCAAGTTCTTGTCTTGGATGATATTCAAGCTGACAAAGCCAAGGACATCATGTCTTTTGCCGGCAAAGGAATGTCTCAAAACCAGAACGACTGTGCTTACACTTTCCCTGCTACAACTTCTGCTACTCCCAGTAGACCATTCCCTTTTCTTATGAATATCATTCCAACCACTGCCAATAATTCGGTTCAAGACCACCCTCAAACACCATCCAAACCTGTTATTTGTGATCTACCATTGGCTAGGAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGGATAGAATTGCTGCCAGAGCACCATATCAAACAAGCAATCACATGGCAGCCCTTAATAAGCTAGCTGAATCCAAGCCATGGCTCACCTTGGCACCTAAATCACCACAACAAGACGAATCTGATTCTGATAGCAGCTCCAGCTTTGTGTTATTTTAA 588 0.4286 MNPWNMRTSKLLSQQLAYPPYRLVEEIPNMGNSSCVSKEPRGSQMTIFYGGQVLVLDDIQADKAKDIMSFAGKGMSQNQNDCAYTFPATTSATPSRPFPFLMNIIPTTANNSVQDHPQTPSKPVICDLPLARKASLHRFLEKRKDRIAARAPYQTSNHMAALNKLAESKPWLTLAPKSPQQDESDSDSSSSFVLF* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1742 195 Pfam tify domain 40 72 IPR010399 -
Gso1g1742 195 MobiDBLite consensus disorder prediction 174 195 - -
Gso1g1742 195 ProSiteProfiles Tify domain profile. 38 73 IPR010399 -
Gso1g1742 195 SMART tify_2 38 73 IPR010399 -
Gso1g1742 195 Pfam Jas motif 129 154 IPR018467 -
Gso1g1742 195 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 5 175 IPR040390 -
Gso1g1742 195 PANTHER PROTEIN TIFY 10A 5 175 - -
Gso1g1742 195 MobiDBLite consensus disorder prediction 172 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1742 Gso-Chr1 54244901 54246506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1742 36 175 Tify Gene Family AT1G19180 35.616 5.40e-22 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gso1g1742 tify 1.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1742 K13464 - gmx:100800709 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1742 1 54244901 54246506 Gso11g0331 11 2791935 2793080 GST