Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1740 ATGGAAGAACGGTACGAGACTTTGAAGGAGCTTGGTTCAGGGAACTTCGGAGTGGCAAGGTTGGCCAAAGACAAGGAGACAGGAGAACTTGTTGCTATCAAATACATAGAAAGGGGAAAAAAGATTGATGCAAATGTTCAACGGGAGATAGTTAATCATCGATCTTTAAGGCATCCAAATATTATCAGGTTCAAAGAGGTATTTCTGACCCCTACTCATTTAGCTATCGTCCTAGAGTATGCTGCTGGTGGTGAACTCTTCGAGAGGATATGCAATGCTGGTCGATTGAGTGAAGATGAGGCAAGATTTTTCTTTCAACAACTAATATCTGGAGTTAGCTATTGTCATTCCATGCAAATATGTCATAGAGATCTGAAATTGGAAAACACTCTACTAGACGGAAATCCAGCTCCTAGACTTAAAATTTGTGACTTTGGTTTCTCCAAGTCTGCTTTGCTGCACTCTCAACCTAAATCAACTGTTGGAACACCTGCATACATTGCTCCAGAAGTTTTGTCACGAAAGGAATATGATGGAAAGGTTGCCGATGTTTGGTCGTGTGGTGTGACTCTTTATGTCATGTTAGTTGGAGCATACCCATTTGAAGATCCAGAAGATCCTAAAAATTTCAGAAAGAGTATTGGGAGAATTATGAGTGTTCAATACGCCATACCCGACTACGTGCGTGTCTCTAAGGAGTGTAGGCATCTTATCTCTTGTATTTTTGTTGCCAATCCTGCCAAGAGGATCAGCATCTCGGAGATAAAACAGCACCTTTGGTTTAGGAAGAACCTGCCAAGGGAGATAATTGAGGCTGAAAGAAGGGGTTACGAGGAAACACAAAAGGACCAACCAAGCCAAAGTGTGGAAGAAATCATGCGGATCATACAAGAAGCAAGGACAAAAATCCACACTGGTGAGCAAGCTGGTACAGGAACTTCGGATGCTGTGCATGGTGATGAGGCTAATGAGGAAGTTGATATTAATGACCACTATGCCAAATACCTAGCCCTTAATTAG 1020 0.4206 MEERYETLKELGSGNFGVARLAKDKETGELVAIKYIERGKKIDANVQREIVNHRSLRHPNIIRFKEVFLTPTHLAIVLEYAAGGELFERICNAGRLSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGNPAPRLKICDFGFSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKSIGRIMSVQYAIPDYVRVSKECRHLISCIFVANPAKRISISEIKQHLWFRKNLPREIIEAERRGYEETQKDQPSQSVEEIMRIIQEARTKIHTGEQAGTGTSDAVHGDEANEEVDINDHYAKYLALN* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1740 339 CDD STKc_SnRK2 4 260 - -
Gso1g1740 339 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1740 339 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 3 332 - -
Gso1g1740 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Gso1g1740 339 PANTHER SERINE/THREONINE KINASE 3 332 - -
Gso1g1740 339 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1740 339 SUPERFAMILY Protein kinase-like (PK-like) 3 273 IPR011009 -
Gso1g1740 339 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Gso1g1740 339 Gene3D Transferase(Phosphotransferase) domain 1 81 269 - -
Gso1g1740 339 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso1g1740 339 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1740 Gso-Chr1 54229523 54233368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1740 4 273 CBL-interacting serine-threonine protein kinases AT4G24400 44.128 1.93e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Gso1g1740 Pkinase 3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1740 K14498 - gmx:547790 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1740 1 54229523 54233368 Gso1g1740 1 54229523 54233368 ECH
Gso1g1740 1 54229523 54233368 Gso11g0333 11 2800060 2803975 GST
Gso1g1740 1 54229523 54233368 Gso5g0569 5 6651202 6655282 PCT
Gso1g1740 1 54229523 54233368 Gso17g1254 17 12302205 12306173 PCT
Gso5g0569 5 6651202 6655282 Gso1g1740 1 54229523 54233368 PCT
Gso17g1254 17 12302205 12306173 Gso1g1740 1 54229523 54233368 PCT