Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1730 ATGACAATACTACTAGCTGTTCGTGATTTTCCGGATGGATGTGGAGGATTTCCGAAATGTGTTGGTACAATTGTTGAGCTTGAGGATACGAATAAGAATGCTCAACATTTAGCAAGAAGGTATCTTCCTCCAAGAAAAGCTTCAGCTGTCAGAGACTTCCTTCCTTTATTTGGAGGATGCAATGACAATGGGAAGAAAGTGGGTCTACAAAACCCCTCTGTAGATGACAATCCATTGAAAAATGTAGCAGCAGCAGCTGATGATGTGAAAGAAGTTAAGAGTAACATTCAAGATGACTATGGTCGCAAGAGAAAGCTTGTGGACATCTATCAAACTGATTCTGAAAAGAATGTTGCTGAGAGAGTGAAGAAGCTGCATGCATTTGAAGAACCATCTTCTTCTCAGATGAAAATAGTGCTAGGTTTGATGGCTAAATCAGCATGTCCTTGGAGTTCTGGCAAAGGTTCTTCCAACTTGAAGTTGGGAGATGCTAAAAATGGAGACGAGAGTAAGAAAGTGTTTTCTTTTGCTTTGCCTGACAGGTCTAGAAGAGCTATCAAGACTAAAGGTCTTTTAGGGCAGAAGCCTTTGAAAAAGAAGGGAAACGCTTCTGCTTCTCAAGGTACGGGTGAACTAGAAATTTGGGAAAAGGAGGATCGTCTTGACCCCGGTGAAATTAGTGAAGACCTTCAGATTTTTCTGAAATCACACAAGTTCGGTGTAAATGTTACTCCCTCTTCTCATTCTAATTTCATTGGTAATGAGAATGACCGGAAAAAAGTGAGGGAAACATTACAGTTGTTTCAAGTTGTTTCTAGGAAACTTTTAGAGGAAGGAGAATCAAAGTCAAATGAGCTAGGAAAAAGAAAGAGGGTTGATTTAATTGCTGCAAGGATTCTTAAGGACAATGGGAATCATGTTAACTCAGGCAAGAAGATACTGGGCCCTGTCCCCGGGGTTGAAGTAGGTGATGAATTTCAATATAGGGTGGAGCTTAATATAATTGGTCTTCATCGTCAGATTCAGGGTGGCATAGACTATGTGAAGCACAATGGTAAGATCCTTGCGACTAGCATTGTTGCTTCAGGTGGCTATGCTGATTATTTGGTCAATTCAGATATATTGGTATATACAGGGCAGGGTGGGAATGTGATGAGCAATGACAGAAAACCTGAAGATCAGAAGCTTGAGCGGGGCAATCTTGCTTTGAAGAACAGTAGTGAGGAAAAGAATCCTGTTAGGGTGATTCGCGGCTCGGAAGCAATGGATGACAAATACAAGACATATGTTTATGATGGATTGTATGTGGTTGAGACATATTGGCAGGACAGGGGATCTCATGGGAAGCTGGTTTATAGGTTTCGCCTTCAAAGAATTCCTGGTCAAAAGCTTGCTTTGAAGGAAGTGAAGAAATCTAAATATTTCAAAACAAATTTCCATATGTGCTGTGAACACCATAGATGA 1464 0.4071 MTILLAVRDFPDGCGGFPKCVGTIVELEDTNKNAQHLARRYLPPRKASAVRDFLPLFGGCNDNGKKVGLQNPSVDDNPLKNVAAAADDVKEVKSNIQDDYGRKRKLVDIYQTDSEKNVAERVKKLHAFEEPSSSQMKIVLGLMAKSACPWSSGKGSSNLKLGDAKNGDESKKVFSFALPDRSRRAIKTKGLLGQKPLKKKGNASASQGTGELEIWEKEDRLDPGEISEDLQIFLKSHKFGVNVTPSSHSNFIGNENDRKKVRETLQLFQVVSRKLLEEGESKSNELGKRKRVDLIAARILKDNGNHVNSGKKILGPVPGVEVGDEFQYRVELNIIGLHRQIQGGIDYVKHNGKILATSIVASGGYADYLVNSDILVYTGQGGNVMSNDRKPEDQKLERGNLALKNSSEEKNPVRVIRGSEAMDDKYKTYVYDGLYVVETYWQDRGSHGKLVYRFRLQRIPGQKLALKEVKKSKYFKTNFHMCCEHHR* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1730 487 Pfam SAD/SRA domain 314 462 IPR003105 -
Gso1g1730 487 SUPERFAMILY PUA domain-like 298 479 IPR015947 -
Gso1g1730 487 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 135 483 - -
Gso1g1730 487 SMART G9a_1 310 462 IPR003105 -
Gso1g1730 487 Gene3D - 298 484 IPR036987 -
Gso1g1730 487 ProSiteProfiles YDG domain profile. 315 458 IPR003105 -
Gso1g1730 487 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 135 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1730 Gso-Chr1 54077604 54080647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1730 196 477 Su(var)3-9 homologs AT5G04940 35.640 1.98e-40 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1730 K11420 - gmx:100783959 955.281