Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1726 ATGGCGCTTTATCTTTTCTGTCTTCTTCTTGCTATCACCTTCATTTTCATGCAAACTCTGGCAGATACTTCATGCACTGATTGTTTCATTCATTCTCGGGCAGCTTATTATCCAAATTCTGAAGAACACGGAACAGATGTTGGTGCATGTGGGTTTGGTTCCTTTGGTGCTACAGTCAATGGTGGAGATGTATCAGCTGCATCTTCTCTTTATCGAAATGGTGTTGGTTGTGGTGCCTGTTACCAGGTGAGGTGTACCAACAGTGTATATTGCTCAGAAAATGGTGTGACTGCAGTTATAACCGACCAAGGTTCAAGTGATAACACTGATTTCATTCTTAGCAAACATGCCTTTAGCCGGATGGCTCAAACCACTGATGCAGCTGCTTCTCTATTAGCCCTTGGCGTGGTTGATATTGAATATAGACGTGTTGCATGCAGCTACCCAGATAAAAACATAACAATCAAGATAGATGAGAGCAGCAACAACCCATATTACTTGGCTTTTGTCATTTGGTATCAACAAGGAAGGAGAGACATAACTGCTGTGCAGCTCTGTGAGACTCAAAACTTTGTGTGCCAGTTACTGGATAGGAGCCATGGGGCAGTGTGGACTACTACCTCTCCACCGAGTGGACCCTTGTCTTTAAGGATGTTATTTAGTGATGAAGAAGAGGGAGAAGAAACATGGGTTGTTCCTGTTAATAACATACCCGGAGACTGGAAGGCTGGTGAAACATACGATTCAGGGGTACAAGTGAACCAATAG 768 0.4349 MALYLFCLLLAITFIFMQTLADTSCTDCFIHSRAAYYPNSEEHGTDVGACGFGSFGATVNGGDVSAASSLYRNGVGCGACYQVRCTNSVYCSENGVTAVITDQGSSDNTDFILSKHAFSRMAQTTDAAASLLALGVVDIEYRRVACSYPDKNITIKIDESSNNPYYLAFVIWYQQGRRDITAVQLCETQNFVCQLLDRSHGAVWTTTSPPSGPLSLRMLFSDEEEGEETWVVPVNNIPGDWKAGETYDSGVQVNQ* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1726 255 Gene3D - 17 147 IPR036908 -
Gso1g1726 255 PANTHER EXPANSIN-B3 6 254 - -
Gso1g1726 255 Gene3D - 148 253 IPR036749 -
Gso1g1726 255 Pfam Lytic transglycolase 67 141 IPR009009 -
Gso1g1726 255 Pfam Expansin C-terminal domain 153 232 IPR007117 -
Gso1g1726 255 SUPERFAMILY Barwin-like endoglucanases 16 150 IPR036908 -
Gso1g1726 255 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Gso1g1726 255 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Gso1g1726 255 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Gso1g1726 255 SUPERFAMILY PHL pollen allergen 151 249 IPR036749 -
Gso1g1726 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Gso1g1726 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 249 IPR007117 -
Gso1g1726 255 PANTHER EXPANSIN-LIKE B1 6 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1726 Gso-Chr1 54033957 54036830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1726 9 251 Expansin Gene Family AT4G17030 42.041 3.55e-59 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1726 - - gmx:100794009 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1726 1 54033957 54036830 Gso1g1726 1 54033957 54036830 ECH
Gso1g1726 1 54033957 54036830 Gso11g0351 11 3013850 3015956 GST
Gso1g1726 1 54033957 54036830 Gso5g0597 5 7107340 7109654 PCT
Gso1g1726 1 54033957 54036830 Gso17g1282 17 12618455 12620740 PCT
Gso5g0597 5 7107340 7109654 Gso1g1726 1 54033957 54036830 PCT
Gso17g1282 17 12618455 12620740 Gso1g1726 1 54033957 54036830 PCT