Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1720 ATGGTTTGCACTGCCAATGATTTACAAGAATGGAAAGATTTCCCAAAGGGACTTAGAGTTCTTCTGCTTGAAGGAGATAGTAGTTCTGCTGCTGAGATAAGAGAACAACTTGAGGCCGTGGACTATAATGTTTCCACTTTCTACGATGAGAATGAAGCCTTGTCAGCACTCTCGAGTAGTCCTGAAGGCTTCCATGTTGCTATAGTGGAGGTGAGTACAAGCTGTAGCCTTGGAGGTTTCAAATTTCTTGAGAATTCAAAGGACTTGCCTACCATTATGACTTCAAAGGACCAGTGCCTGAACACCATGATGAAGTGCATTGCGCTTGGTGCAGTTGAGTTTCTCAGTAAACCACTCTCTGAGGACAAGCTCAAAAATATTTGGCAGCATGTTGTTCACAAGGCATTTAATGCTGGGGCAAATGTCCTGTCTGAATCACTAAAACCTGTCAAAGAATCTGTAGAATCCATGCTGCAGCTTCAAACAGAAAATGGACAAGATAAAAGTAGGATTTCAATTGATTTAGAAAATGTGTCGAGGTTTAGTGATATTGACCATGAGCAGTCTGCTGTATGTGATAAATATCCGGCTCCGTCAACCCCTCAATTAAAGCAGGGGACAAGGTTACTGGATGATGGAGATTGCCATGATCAGACTAATTGCTCAACAGAAAAAGAAAGTGTGGAACATGATGGGGAATGTAAATCTGTCGAAACTTTGTGTGAGAATTTGAATGCTGAAAGTTCTCCTCAACCAAGGGAACCTGATAAGACTCTGATTAAGGAGGAAGAGGATTTTGCCAATGGTTCCAGGGGTGAGAGTGCTGTTTCACTGAGTCCAAATAATAAAAAGTTTCTCAGCAATGCCGATGGTAATACATCTCCAAATAGAACGGGCGTACTTAATGATTCATGTGAGATTAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACTCCTGAGCTACATAAAAAATTTGTGAAGGCTGTCGAACAACTAGGTATCGATCAAGCCATTCCTTCTAGAATATTGGAGATAATGAAAGTGGAAGGCTTGACAAGGCACAATGTGGCAAGCCATCTTCAGAAATATAGAATACACAAGAGACAAAGTGCACCCGGGGAAGAAGATCGGAAATGGCATAATCAAAGGGATGCAATGCAAAGGAACTATTATATGCAAAGACCAATCATGGCATACCCTCCATATCATTCAAATCACACCCTTTCTCCAGCTCCTATATATCCTATGTGGGGACAACCTGGTAGTCAAACAGCTGGTGTACAGATTTGGGGCCATCCTGGTTATCACATATGGCATCCTACAGAAAGTTGGCACTGGAAGCCTTATCAGGGGGTGCATGTGGATGCTTGGGGATGCCCATTGTTGCCAGCCCCTCAAGCTCCTTGTTTTCCTTACAATCAAAATATACCTGGATTGCACAATCCTAAAGCAGTGGACTATAGATTCGGCATGCCACAAAGTTCCTTTGAGCATCATCCGGCAGAGGAGGTGGTAGACAAGGTTGTGAAGGAAGCAATAAGCAAGCCATGGCTACCATTGCCCTTAGGACTCAAACCTCCTTCCATGGATAGTGTGTTGGCTGAGCTCTCCAAACAAGGCATTTCCGGCATCCCTCTTGGCAACAAGCGTTCTTCTACTCCTAAACTCCGCTGA 1677 0.4335 MVCTANDLQEWKDFPKGLRVLLLEGDSSSAAEIREQLEAVDYNVSTFYDENEALSALSSSPEGFHVAIVEVSTSCSLGGFKFLENSKDLPTIMTSKDQCLNTMMKCIALGAVEFLSKPLSEDKLKNIWQHVVHKAFNAGANVLSESLKPVKESVESMLQLQTENGQDKSRISIDLENVSRFSDIDHEQSAVCDKYPAPSTPQLKQGTRLLDDGDCHDQTNCSTEKESVEHDGECKSVETLCENLNAESSPQPREPDKTLIKEEEDFANGSRGESAVSLSPNNKKFLSNADGNTSPNRTGVLNDSCEIKANRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILEIMKVEGLTRHNVASHLQKYRIHKRQSAPGEEDRKWHNQRDAMQRNYYMQRPIMAYPPYHSNHTLSPAPIYPMWGQPGSQTAGVQIWGHPGYHIWHPTESWHWKPYQGVHVDAWGCPLLPAPQAPCFPYNQNIPGLHNPKAVDYRFGMPQSSFEHHPAEEVVDKVVKEAISKPWLPLPLGLKPPSMDSVLAELSKQGISGIPLGNKRSSTPKLR* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1720 558 Gene3D - 309 370 - -
Gso1g1720 558 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Gso1g1720 558 SUPERFAMILY CheY-like 16 134 IPR011006 -
Gso1g1720 558 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 553 - -
Gso1g1720 558 MobiDBLite consensus disorder prediction 266 299 - -
Gso1g1720 558 MobiDBLite consensus disorder prediction 192 214 - -
Gso1g1720 558 MobiDBLite consensus disorder prediction 272 299 - -
Gso1g1720 558 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 313 368 IPR006447 GO:0003677
Gso1g1720 558 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 310 369 IPR017930 -
Gso1g1720 558 Pfam Myb-like DNA-binding domain 316 365 IPR001005 -
Gso1g1720 558 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 553 IPR044825 GO:0003700|GO:0045893
Gso1g1720 558 Gene3D - 18 142 - -
Gso1g1720 558 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Gso1g1720 558 SUPERFAMILY Homeodomain-like 312 369 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1720 Gso-Chr1 53970993 53977647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1720 1 546 Response Regulator Gene Family AT4G18020 48.873 9.98e-142 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gso1g1720 Response_reg 1.6e-07 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1720 - - gmx:100779121 1127.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1720 1 53970993 53977647 Gso11g0357 11 3048026 3054712 GST
Gso1g1720 1 53970993 53977647 Gso5g0609 5 7312526 7319417 PCT
Gso1g1720 1 53970993 53977647 Gso17g1290 17 12764097 12770963 PCT
Gso5g0609 5 7312526 7319417 Gso1g1720 1 53970993 53977647 PCT
Gso17g1290 17 12764097 12770963 Gso1g1720 1 53970993 53977647 PCT