Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1709 ATGCTAGTTCCACTTGCCCCGTACCCTCCACCCCCTCCACCAGCTCCATATACGCCTCCACCAAATGGTGCACAGAGTCAACTAGTCTGTTCTGGGTGTAGAAACCTTCTGCTCTATCCAGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACAACAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGTGGAGGCTGTCACACTTTCCTCATGTACATCCGTGGAGCCACAAGTGTGCAATGCTCTTGCTGTCACACGGTCAATCTAGCTTTGGAAGCAAATCTGGTGGCGCATGTCAACTGTGGGAACTGTAAGATGCTACTCAGGTACCAATATGGAGCAAGATCCGTGAAATGTGCCGTTTGCAGTTTTGTAACGTCAGTTGGGGCCTCGACAAGCACCACTGAGCAGAAATTCAGCACCTAA 444 0.5113 MLVPLAPYPPPPPPAPYTPPPNGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPGTEMAQLVCGGCHTFLMYIRGATSVQCSCCHTVNLALEANLVAHVNCGNCKMLLRYQYGARSVKCAVCSFVTSVGASTSTTEQKFST* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1709 147 PANTHER PROTEIN LOL1 1 144 - -
Gso1g1709 147 MobiDBLite consensus disorder prediction 1 20 - -
Gso1g1709 147 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 27 57 IPR005735 -
Gso1g1709 147 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 104 133 IPR005735 -
Gso1g1709 147 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 66 95 IPR005735 -
Gso1g1709 147 Pfam LSD1 zinc finger 107 131 IPR005735 -
Gso1g1709 147 Pfam LSD1 zinc finger 30 54 IPR005735 -
Gso1g1709 147 Pfam LSD1 zinc finger 69 93 IPR005735 -
Gso1g1709 147 PANTHER PROTEIN LSD1 1 144 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1709 Gso-Chr1 53835658 53838289 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Gso1g1709 zf-LSD1 9.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1709 - - gmx:100788563 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1709 1 53835658 53838289 Gso5g0967 5 31682340 31684843 PCT
Gso1g1709 1 53835658 53838289 Gso17g1306 17 13063551 13066111 PCT
Gso5g0967 5 31682340 31684843 Gso1g1709 1 53835658 53838289 PCT
Gso17g1306 17 13063551 13066111 Gso1g1709 1 53835658 53838289 PCT