Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1706 ATGGATTCTCGTGAACAGCCTCAGCCACAACCGCCAAACATGATGGTGGGACCCACCGTGTACCCTTCGATGTTGGCCCCCGCCACCGCTAGATTCCCTTACAGCAACAACAACAACAACAACAGCAATCCTCCTCCTCCTTCTTCGGAGCCTCTCAACAGCGACGCCAACACCAACCATAATAACAGCACGTTCGAGGCGTTGAAGCCTTGTGCGCTGGCCGCCTCGGAATCGTCGAAGAAGAAGCGGGGCCGGCCCAGAAAATACTCGCCCGATGGCAACATTGCGTTGGGCCTGGGCCCAACTCACGCCCCCGCTTCCTCCGCCGACCCCCCCGCCAAAAAACACCGCGGTCGCCCCCCTGGCTCCGGCAAGAAACAGATGGATGCTCTCGGCATTCCTGGAACTGGTTTTACTCCCCATGTTATCACCGCCGAAGTTGGCGAGGATATTGCTTCAAAGCTTGTGGCCTTTTGTGAGCAAGGACGTCGGACAGTTTGCACCCTTTCTGCTTCTGGTGCAATCCGCAATGTCACCATTCGAGCACCAGACATGCCTGCTGGTATTCTGGCCTATGAGGGTCAATTTGAGATCATATCACTTAAAGCTGCTACGCTACAATCTGACAATAACAGAATGGCTGCCTTGAGTGTGAGCATAGCAGGTCCTGATGGACGATTATTGGGTGGCGAAGTTGTTGGAGCCCTTACTGCAGCAACGGCGGTGCAGGTAATTCTGGGTAGCTTTATTGCTGATGGAAAAAAGTCTAGCTCAAGTAACCTGAAATCTGGACGTTCTTCGACGCCATCATCTCAGATGTTAGCCTTTGGTGCTTCTCCGACTCCAACTACTCCTACCTCTCTAGGGCCTTCAACTGATTCATCTGAGGATAATGAGAATAGTCATTTTAGTAAGGGGCCAGGTGGCTCAGGACTCTACAATAATAATGCTAGTCAGCCCATTCATACCATGCCCATGTACCAACATCAACTATGGGCTGGCCATACTCAGCAGTGA 1017 0.5251 MDSREQPQPQPPNMMVGPTVYPSMLAPATARFPYSNNNNNNSNPPPPSSEPLNSDANTNHNNSTFEALKPCALAASESSKKKRGRPRKYSPDGNIALGLGPTHAPASSADPPAKKHRGRPPGSGKKQMDALGIPGTGFTPHVITAEVGEDIASKLVAFCEQGRRTVCTLSASGAIRNVTIRAPDMPAGILAYEGQFEIISLKAATLQSDNNRMAALSVSIAGPDGRLLGGEVVGALTAATAVQVILGSFIADGKKSSSSNLKSGRSSTPSSQMLAFGASPTPTTPTSLGPSTDSSEDNENSHFSKGPGGSGLYNNNASQPIHTMPMYQHQLWAGHTQQ* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1706 338 MobiDBLite consensus disorder prediction 254 320 - -
Gso1g1706 338 Gene3D - 140 262 - -
Gso1g1706 338 ProSiteProfiles PPC domain profile profile. 135 271 IPR005175 -
Gso1g1706 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 36 303 IPR039605 GO:0003680
Gso1g1706 338 SUPERFAMILY AF0104/ALDC/Ptd012-like 137 250 - -
Gso1g1706 338 MobiDBLite consensus disorder prediction 1 134 - -
Gso1g1706 338 SMART AT_hook_2 80 92 IPR017956 GO:0003677
Gso1g1706 338 SMART AT_hook_2 114 126 IPR017956 GO:0003677
Gso1g1706 338 CDD DUF296 139 249 IPR005175 -
Gso1g1706 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 36 303 - -
Gso1g1706 338 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 249 IPR005175 -
Gso1g1706 338 MobiDBLite consensus disorder prediction 52 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1706 Gso-Chr1 53804398 53808045 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1706 77 338 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 42.308 2.10e-65 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1706 - - gmx:100788026 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1706 1 53804398 53808045 Gso11g0369 11 3171579 3175569 GST
Gso1g1706 1 53804398 53808045 Gso5g0962 5 31628129 31633333 PCT
Gso1g1706 1 53804398 53808045 Gso17g1310 17 13103274 13109572 PCT
Gso5g0962 5 31628129 31633333 Gso1g1706 1 53804398 53808045 PCT
Gso17g1310 17 13103274 13109572 Gso1g1706 1 53804398 53808045 PCT