Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1705 ATGGCTGGTTTGGATTTAGGCACGGCTTCACGCTTCGTCCAAAGTCTCCACAGACCAGACTTCAACCAACAACAAGAATCCGAGGAAGACGCCAAACCCCAAGATGGGCCCCAGCAGGGCGACGTGGTGGGGCGCCGCCCGCGGGGGCGTCCTGCGGGCTCCAAGAACAAGCCCAAGCCGCCGGTCATCATTACGCGGGAGAGCGCCAACGCCCTCCGCGCCCACATCCTCGAAGTCGCCAGCGGCTGCGACGTCTTCGAAAGCGTCGCCAGCTACGCGCGCCGCCGCCAGCGCGGGATCTGTATCCTCAGCGGCAGCGGAACGGTCACGAATGTGAGCCTGCGGCAGCCGGCGTCGGCGGGCGCGGTGGCCACGCTTCACGGCAGGTTCGAGATACTCTCCCTGACGGGATCGTTCCTTCCTCCGCCGGCTCCTCCGGGGGCGACGAGTCTCAGCATATACCTCGCCGGAGGACAGGGGCAGGTGGTGGGTGGGAGTGTGGTAGGAGAGTTGACGGCGGCGGGACCGGTAATTGTGATCGCGGCGTCGTTCACGAACGTGGCTTATGAAAGGTTACCGTTGGAGGAAGAAGAAGAACAGGTTCAGATTTCTGGTGCTGCTGCCAATAACAATAATAATAGTAACCCCTATCATGATCCTTCTTCGGGACTTCCTTTCTTCAATTTGCCAATGAATGTTCAGTTGCCTGTGGATGCCTGGGCGGGAAACTCAACTACACGTTCACCATTTTGA 753 0.6016 MAGLDLGTASRFVQSLHRPDFNQQQESEEDAKPQDGPQQGDVVGRRPRGRPAGSKNKPKPPVIITRESANALRAHILEVASGCDVFESVASYARRRQRGICILSGSGTVTNVSLRQPASAGAVATLHGRFEILSLTGSFLPPPAPPGATSLSIYLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLEEEEEQVQISGAAANNNNNSNPYHDPSSGLPFFNLPMNVQLPVDAWAGNSTTRSPF* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1705 250 Gene3D - 72 209 - -
Gso1g1705 250 MobiDBLite consensus disorder prediction 1 62 - -
Gso1g1705 250 ProSiteProfiles PPC domain profile profile. 69 209 IPR005175 -
Gso1g1705 250 SUPERFAMILY AF0104/ALDC/Ptd012-like 69 200 - -
Gso1g1705 250 PIRSF ESCAROLA 8 246 IPR014476 GO:0003680
Gso1g1705 250 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 22 250 - -
Gso1g1705 250 CDD DUF296 73 156 IPR005175 -
Gso1g1705 250 Pfam Plants and Prokaryotes Conserved (PCC) domain 73 186 IPR005175 -
Gso1g1705 250 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 22 250 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1705 Gso-Chr1 53791637 53792875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1705 1 250 AT-hook Motif Nuclear Localized (AHL) Family AT2G35270 58.392 2.36e-95 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1705 - - gmx:100818680 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1705 1 53791637 53792875 Gso11g0371 11 3187923 3189355 GST
Gso1g1705 1 53791637 53792875 Gso5g0959 5 31612209 31613767 PCT
Gso1g1705 1 53791637 53792875 Gso17g1312 17 13123124 13126571 PCT
Gso5g0959 5 31612209 31613767 Gso1g1705 1 53791637 53792875 PCT
Gso17g1312 17 13123124 13126571 Gso1g1705 1 53791637 53792875 PCT