Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1704 ATGGCTGCAGAGATTGGCCTAGTCTCCATGACCCAGATCCAAAACCTATCACAAACCCAACACCCCAAAAACCCACAACCTCCTCAACCAAAAAACCCTAACACCACCACCACCTCCTCTTCTACTTGGATGTGGAACCCTAGGGAGCAACAACAGCAGCAGGTAGAAGATGATGATGACTCCTGGGAGGTCAGAGCTTTTGCAGAAGACACAAGGAACATCATGGGCACCACATGGCCTCCTAGGTCCTACACCTGCACCTTCTGCAGAAGGGAGTTTCGCTCCGCCCAAGCCCTCGGCGGCCACATGAACGTCCACCGCCGCGACCGGGCCCGCCTCCACCAAGCTCCACCTTCCTCCTGCTCCAACCCCATGTCCTCTTCTCTTCCCACTTCATCCTTCATCAATATCCCTCCTCAAGAGCTTGTTGGAAATGCTGGCTTGTGCCTCCTCTACCACTTGCCCACGAGCCCTAGTAGTGCACCACCCTTCCCTTCACCCACTTCTAATGGGGCTTCTCCCTCCACTCTTCTCTCTATCTCCTCCTATCCTACAAACAACTTTCTGATGCAAACTTCCTTTAATTTTCCCGGTGCACCCCCAACTGGGATCAATACTACTACTGTTTCCTCTTTGTGCTATAACTCTAGCAAAGTGGAACAATCCGCAACTTCTTCCTCTATTGATAATGGCCACCTCGAAGAGCTTGATCTAGAGCTCCGCCTCGGGCACAAACCAACACCAACCTCATAA 753 0.5219 MAAEIGLVSMTQIQNLSQTQHPKNPQPPQPKNPNTTTTSSSTWMWNPREQQQQQVEDDDDSWEVRAFAEDTRNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQAPPSSCSNPMSSSLPTSSFINIPPQELVGNAGLCLLYHLPTSPSSAPPFPSPTSNGASPSTLLSISSYPTNNFLMQTSFNFPGAPPTGINTTTVSSLCYNSSKVEQSATSSSIDNGHLEELDLELRLGHKPTPTS* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1704 250 MobiDBLite consensus disorder prediction 33 51 - -
Gso1g1704 250 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 44 243 - -
Gso1g1704 250 Pfam C2H2-type zinc finger 84 108 - -
Gso1g1704 250 PANTHER OS07G0101800 PROTEIN 44 243 - -
Gso1g1704 250 SMART c2h2final6 84 106 IPR013087 -
Gso1g1704 250 Gene3D Classic Zinc Finger 75 127 - -
Gso1g1704 250 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Gso1g1704 250 SUPERFAMILY beta-beta-alpha zinc fingers 81 111 IPR036236 -
Gso1g1704 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Gso1g1704 250 MobiDBLite consensus disorder prediction 8 22 - -
Gso1g1704 250 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1704 Gso-Chr1 53772051 53773441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1704 39 246 C2H2 Transcription Factor Family AT4G17810 42.326 7.10e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso1g1704 zf-C2H2_6 5.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1704 - - gmx:100818142 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1704 1 53772051 53773441 Gso1g1704 1 53772051 53773441 ECH
Gso1g1704 1 53772051 53773441 Gso11g0372 11 3207316 3209090 GST
Gso1g1704 1 53772051 53773441 Gso5g0958 5 31502789 31504033 PCT
Gso1g1704 1 53772051 53773441 Gso17g1314 17 13168772 13170557 PCT
Gso5g0958 5 31502789 31504033 Gso1g1704 1 53772051 53773441 PCT
Gso17g1314 17 13168772 13170557 Gso1g1704 1 53772051 53773441 PCT