Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1702 ATGGAGAATAATAACACATCGATGGACGCATCAGAAGCCAGCTGGTTATCTGATTTGGAAACGGAGGATGGTTGCAACTTGTTCCGACAATGTCACCTTGAGACGTTGCTCGACGATGATGAAGAGTTGCTTTCGCATGAGATAGCAAGTGCCTTTGAGAACTTGCAGCAACCTTTGTCTTCGGAGAGTAACACTTCGTATTCGGAGACTCCGATGAACTCATTCACGGAAGAAACAAGTTTTGAGAAGCCCATCAAGCAGCCCAAAACGAATGCCTCTAGTTGGAACTCATCGTTCACTAAGCATTTTTCGTTATCTTCATCCCCTTCTTCTCCAACCTCCAAGATCCTGTCTTTCGAGAACTCAAACTCGTCCCCTCCCAATCCCAACAACACCGATCAGTTTCATGGTATTGTTGTTTCTGCTGCCTTAAGCCCAAAGCAGATCAAGACCAAAGGTGCTTCAGTTTCACTCCCACATACCCGGAAACGTTTATCAGAAAACCAGAACTTTGAAGCTGAAAGCCCCAAAGGCCATAGAAGCTACAAGTCCCCATCTCACGTTCGGGATCACATCATCGCCGAGAGAAAACGAAGAGAGAAGCTCAGCCAGAGCTTAATCGCTCTAGCAGCTCTTATTCCTGGCTTAAAGAAGATGGACAAGGCATCAGTGCTGGGAGATGCTATAAAGTACGTGAAAGAGCTCCAAGAGCGTATGAGAATGCTTGAAGAAGAGGACAAGAATAGAGATGTGGAGTCTGTGGTGATGGTGAAGAAACAACGGCTGAGCTGCTGCGACGATGGTTCAGCTTCACATGAAGATGAAGAAAACAGTGAAAGACTCCCCCGCGTGGAAGCGAGAGTGTTAGAGAAGGACGTGCTCCTTCGGATCCACTGCCAAAAGCAAAAGGGGCTTTTGCTCAACATACTTGTCGAGATTCAAAACCTTCATCTCTTCGTTGTCAATAGCAGTGTCCTACCTTTCGGGGATTCCGTACTTGACATAACCATTGTTGCTCAGATGGGAACCGGCTACAATTTGACCATAAATGATCTTGTAAAAAACCTACGCGTGGCTACTTTGAAATCCATGTCATAA 1098 0.4599 MENNNTSMDASEASWLSDLETEDGCNLFRQCHLETLLDDDEELLSHEIASAFENLQQPLSSESNTSYSETPMNSFTEETSFEKPIKQPKTNASSWNSSFTKHFSLSSSPSSPTSKILSFENSNSSPPNPNNTDQFHGIVVSAALSPKQIKTKGASVSLPHTRKRLSENQNFEAESPKGHRSYKSPSHVRDHIIAERKRREKLSQSLIALAALIPGLKKMDKASVLGDAIKYVKELQERMRMLEEEDKNRDVESVVMVKKQRLSCCDDGSASHEDEENSERLPRVEARVLEKDVLLRIHCQKQKGLLLNILVEIQNLHLFVVNSSVLPFGDSVLDITIVAQMGTGYNLTINDLVKNLRVATLKSMS* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1702 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 191 246 IPR036638 GO:0046983
Gso1g1702 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 235 IPR011598 GO:0046983
Gso1g1702 365 Pfam Helix-loop-helix DNA-binding domain 191 236 IPR011598 GO:0046983
Gso1g1702 365 SMART finulus 192 241 IPR011598 GO:0046983
Gso1g1702 365 Gene3D - 180 250 IPR036638 GO:0046983
Gso1g1702 365 PANTHER BHLH TRANSCRIPTION FACTOR 5 365 - -
Gso1g1702 365 Coils Coil 225 252 - -
Gso1g1702 365 MobiDBLite consensus disorder prediction 149 188 - -
Gso1g1702 365 MobiDBLite consensus disorder prediction 165 188 - -
Gso1g1702 365 MobiDBLite consensus disorder prediction 55 135 - -
Gso1g1702 365 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 5 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1702 Gso-Chr1 53717954 53720831 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1702 15 359 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.827 5.69e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso1g1702 HLH 3.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1702 - - gmx:100816551 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1702 1 53717954 53720831 Gso11g0376 11 3249851 3252732 GST
Gso1g1702 1 53717954 53720831 Gso5g0954 5 31257297 31259906 PCT
Gso1g1702 1 53717954 53720831 Gso17g1317 17 13238250 13240797 PCT
Gso5g0954 5 31257297 31259906 Gso1g1702 1 53717954 53720831 PCT
Gso17g1317 17 13238250 13240797 Gso1g1702 1 53717954 53720831 PCT