Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1701 ATGACTACAAGGGAAGAATCATGGACAAGTTGGTTGTGTGATTTGGAACCTGAGGATTACAACAATTTCGTCAATCAATCTGACTCAAACGGGGTTGGTGGAATTTTCCCATCTAGCAAAGACTCTTCTTCAGCTTCTCAAACGGAACACTCTAGCACCGTGAGCAATTCCTCGGAAGATGATAAAGTCTTTGGTGAGAGACCAGCCAAAACACTCAAGATTGGCACTTCAAACTCTTCTAACACGGAGTTTCTCTCACAGAAGAAGGATTCTTCTCCCTCCTACATTATTTTCTCTGACAATGTGAATCAATTGCAAGCACCAACGTTGAAGCCAAAAGGCAAGGTTGCGTGTCACGGGAGAAAGGGGTCCTTGGAAAACCAGAACTTTGGCTCTGTGTCCAGATCTCCCCACCACGCTAAAGATCACATAATTGCTGAGAGAATGAGGAGAGAAAAGATTAGCCAGCAGTTCGTAGCTCTTTCAGCCCTTATTCCAGACCTCAAGAAGATGGACAAAGCCTCGGTGCTTGGGGATGCTATAAAGCACGTGAAACAGCTCCAGGAGCAAGTGAAGCTACTGGAAGAGAAGAACAAAAGGAAGCGGGTAGTGGAATCCGTGGTATATGTTAAGAAATCTAAGCTCTCCGCAGCAGAAGATGTCTTTAACACTTTTTCAAATTCTGGGGACGGAAATTCCTATGACATCTCAGAAACAAAAACAAATGAATCATTTCCCGAAGTTGAGGCAAGAGTGTTAGAGAAGCACGTGCTGATTCGAATCCACTGCGGGAAACAAAAGGGTCTGTTCATCAACATACTCAAAGATATAGAGAATCTTCACCTATCGGTGATCAATAGCAGTATTTTGCTTTTCGGAACCTCCAAATTGGACATAACTATCGTAGCAGAGATGGATGAAGAGTTCAGCCTGAGCGTGAAGGAGCTGGCTAGAAAACTACGAATTGGACTCATGCAATTTATGTAG 987 0.4367 MTTREESWTSWLCDLEPEDYNNFVNQSDSNGVGGIFPSSKDSSSASQTEHSSTVSNSSEDDKVFGERPAKTLKIGTSNSSNTEFLSQKKDSSPSYIIFSDNVNQLQAPTLKPKGKVACHGRKGSLENQNFGSVSRSPHHAKDHIIAERMRREKISQQFVALSALIPDLKKMDKASVLGDAIKHVKQLQEQVKLLEEKNKRKRVVESVVYVKKSKLSAAEDVFNTFSNSGDGNSYDISETKTNESFPEVEARVLEKHVLIRIHCGKQKGLFINILKDIENLHLSVINSSILLFGTSKLDITIVAEMDEEFSLSVKELARKLRIGLMQFM* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1701 328 Coils Coil 177 204 - -
Gso1g1701 328 MobiDBLite consensus disorder prediction 72 87 - -
Gso1g1701 328 MobiDBLite consensus disorder prediction 22 59 - -
Gso1g1701 328 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 2 325 - -
Gso1g1701 328 PANTHER BHLH TRANSCRIPTION FACTOR 2 325 - -
Gso1g1701 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983
Gso1g1701 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 202 IPR036638 GO:0046983
Gso1g1701 328 SMART finulus 144 193 IPR011598 GO:0046983
Gso1g1701 328 MobiDBLite consensus disorder prediction 22 87 - -
Gso1g1701 328 Pfam Helix-loop-helix DNA-binding domain 143 188 IPR011598 GO:0046983
Gso1g1701 328 CDD bHLH_AtNAI1_like 138 213 - -
Gso1g1701 328 Gene3D - 137 208 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1701 Gso-Chr1 53709518 53711236 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1701 9 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.527 6.91e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso1g1701 HLH 9.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1701 - - gmx:100816024 622.083