Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1700 ATGGAAATTGCGTACAACTACTACTTGCCTGAACTTGGAATTGAGGATCCAACCTTCTTTGATCAATACCAGATGGATTCATTTGCTTGTCCACTTGATGACTTTGACTTTGAGTCTTTCTCCGGTTCCCCAGAGAGCAACTCCTCATATCATTTCAACTCCGAAAGCACACCAAATTGTTTCCCAGCTGAAAGTCATGATCAGTCTTTTACCCCTGCAAGACCAACCAAGAGGCTCAAGAACACTTGTGCCAGTGACTTCATTTCCCACAAGGTTTCTGCTTTTTCATCCTCCCAACTTATTTCCTTTGGGCACTTCAATGCCCCGTCACCATCACATGCTTCCCAGCAATTTCAAAACCTGGACTTCGATGAGAAAGCGTCTAGTGAGAACATGGATTTTGCAGCTTTCGTTTCTCAGGGTTCGTATGAGGACAAAAGTTTCCTAAGTTCTGATAATAGAACGAACCAGGTTGGCATAACCACTAGGAACCCAATCCAAGCTCAAGAGCACATAATAGCTGAAAGAAAACGAAGGGAAAATCTCAGCAAGAGGTTCATCGCTCTTTCCGCCATCCTCCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGAGATGCTGTCAAGTATGTGAAACAACTACAAGAACGTGTGCAAACTCTGGAGGAGCAAGCAGCGAAGAGAACACTTGGATCGGGAGTGCTGGTGAAAAGATCTATTATCTTCGCTGATGATGAAACTTCTGACAGCCACTGTGAGCATTCACTCCCCGAAGTCGAAGTCAGGGTTTCTGGGAAAGACGTACTCATCAGAACTCAATGCGACAAACACAGTGGACATGCTGCAATGATACTCAGCGAATTAGAAAAGCTTTACTTCATTGTCCAGAGTAGCAGCTTTTTGCCCTTCGGCAATAGCAAAACTGATGTCACTATTATTGCTCAGATGAACAAGGAAAACTGCATGACAGCAAAGGATCTCCTAGGAAGGTTGCGACAGGCTTTGGTCGGGCATAACTAG 1023 0.4497 MEIAYNYYLPELGIEDPTFFDQYQMDSFACPLDDFDFESFSGSPESNSSYHFNSESTPNCFPAESHDQSFTPARPTKRLKNTCASDFISHKVSAFSSSQLISFGHFNAPSPSHASQQFQNLDFDEKASSENMDFAAFVSQGSYEDKSFLSSDNRTNQVGITTRNPIQAQEHIIAERKRRENLSKRFIALSAILPGLKKMDKASVLGDAVKYVKQLQERVQTLEEQAAKRTLGSGVLVKRSIIFADDETSDSHCEHSLPEVEVRVSGKDVLIRTQCDKHSGHAAMILSELEKLYFIVQSSSFLPFGNSKTDVTIIAQMNKENCMTAKDLLGRLRQALVGHN* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1700 340 Pfam Helix-loop-helix DNA-binding domain 169 216 IPR011598 GO:0046983
Gso1g1700 340 Gene3D - 161 230 IPR036638 GO:0046983
Gso1g1700 340 SMART finulus 172 221 IPR011598 GO:0046983
Gso1g1700 340 CDD bHLH_AtNAI1_like 168 240 - -
Gso1g1700 340 PANTHER BHLH TRANSCRIPTION FACTOR 1 339 - -
Gso1g1700 340 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 339 - -
Gso1g1700 340 Coils Coil 205 225 - -
Gso1g1700 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Gso1g1700 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 229 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1700 Gso-Chr1 53698111 53700696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1700 1 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.288 2.50e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso1g1700 HLH 4.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1700 - - gmx:100815491 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1700 1 53698111 53700696 Gso11g0377 11 3262819 3265288 GST
Gso1g1700 1 53698111 53700696 Gso5g0953 5 31198406 31201942 PCT
Gso1g1700 1 53698111 53700696 Gso17g1318 17 13259467 13262478 PCT
Gso5g0953 5 31198406 31201942 Gso1g1700 1 53698111 53700696 PCT
Gso17g1318 17 13259467 13262478 Gso1g1700 1 53698111 53700696 PCT