Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1690 ATGGGTCTTGACCAGGATGCCAATAGCTCAGGCCTTCACCTCGTTCTAGGGCTTTCTTTGACTGCTACTGTAAAGGAAACCACTCAATCCACCAAGCCTGATGATGATCATCATCTTTGTGTTATTAAGCCAACGCCAACGAAACCTTATCCCCCCAATGAACCGTCTCTAACGTTGGGCCTGTCCGGTGAGAGTTACCACGTGACCAAGCAAGTGCTTAGAAATAACGTTTATTGTGAGGACCCTCTTGAGTTGTCTCGACAGACATCACCTCACAGCGTTGTTTCGTCTTTCTCAACTGGGAGGGTCGTTAAGAGGGAGAGAGATCTTAGCTGTGAAGACATAGAGGTAGAGGCAGAAGAGAGGGTTTCTTCAAGAGTCAGCGACGAAGACGAAGATGGAACCAATGCTAGAAAGAAGCTCAGACTCACCAAAGAACAATCTGCACTGCTAGAAGAGAGCTTCAAACAACACAGCACTCTCAACCCCAAACAGAAACAAGCTTTAGCCAGACGGTTAAATCTCCGGCCTCGACAAGTTGAAGTGTGGTTCCAGAATCGGAGAGCCAGAACAAAGCTGAAGCAAACGGAGGTGGACTGTGAGTTCTTAAAGAAATGCTGTGAAACATTGAAGGACGAAAACAGGAGGTTAAAGAAGGAGCTGCAAGAGCTGAAGGCACTGAAACTAGCTCAACCCTTGTACATGCCTATGCCTGCTGCCACACTCACCATGTGCCCTTCTTGCGACAGGCTCGGTGGCGTTAACGATAACGGTTCGAATAAAAGCCCCTTCTCCATGGCTCCCAAGCCTCACTTCTATAACCCCTTCGCCAATCCTTCAGCAGCATGTTGA 852 0.4824 MGLDQDANSSGLHLVLGLSLTATVKETTQSTKPDDDHHLCVIKPTPTKPYPPNEPSLTLGLSGESYHVTKQVLRNNVYCEDPLELSRQTSPHSVVSSFSTGRVVKRERDLSCEDIEVEAEERVSSRVSDEDEDGTNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARRLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLKDENRRLKKELQELKALKLAQPLYMPMPAATLTMCPSCDRLGGVNDNGSNKSPFSMAPKPHFYNPFANPSAAC* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1690 283 PANTHER - 7 283 - -
Gso1g1690 283 SMART HOX_1 136 198 IPR001356 GO:0003677
Gso1g1690 283 ProSitePatterns 'Homeobox' domain signature. 169 192 IPR017970 GO:0000981|GO:0006355
Gso1g1690 283 Coils Coil 193 230 - -
Gso1g1690 283 Pfam Homeobox associated leucine zipper 194 228 IPR003106 GO:0006355|GO:0043565
Gso1g1690 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 7 283 - -
Gso1g1690 283 CDD homeodomain 138 195 IPR001356 GO:0003677
Gso1g1690 283 Pfam Homeodomain 138 192 IPR001356 GO:0003677
Gso1g1690 283 SUPERFAMILY Homeodomain-like 129 195 IPR009057 -
Gso1g1690 283 ProSiteProfiles 'Homeobox' domain profile. 134 194 IPR001356 GO:0003677
Gso1g1690 283 SMART halz 194 237 IPR003106 GO:0006355|GO:0043565
Gso1g1690 283 Gene3D - 142 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1690 Gso-Chr1 53594784 53596529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1690 1 283 Homeobox Transcription Factor Family AT4G37790 59.667 5.83e-98 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso1g1690 Homeodomain 3.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1690 K09338 - gmx:100784129 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1690 1 53594784 53596529 Gso11g0387 11 3358133 3359928 GST
Gso1g1690 1 53594784 53596529 Gso5g0943 5 30951447 30953154 PCT
Gso1g1690 1 53594784 53596529 Gso17g1327 17 13464679 13466494 PCT
Gso5g0943 5 30951447 30953154 Gso1g1690 1 53594784 53596529 PCT
Gso17g1327 17 13464679 13466494 Gso1g1690 1 53594784 53596529 PCT