Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1685 ATGAAGCCTATAGAAAATGGCAATACCGTTAGCATCAACTATCAAAATAGCTGGTTAGGCTTCTCCCTCTCCCCACAAATGAATATAGGTGTTCCTTCACACCTTCATCAGACACAGCCTTCATCAGCAGCTGTTGAAGCAGTTCCACCAAACTTTTACCATCATACACCTCTCCATAATTATGGCCTTTACTATGAACTGGAAGGTGAACACGTTGGAATGAGTTCATCCTTGCCTATCATGCCCCTTAAGTCCAATGCTTCTCTCTCTGGAATAGAAGCTCTGAGTAGATCACAAGCACAAGCAACGACAACTATTTCAGCAATGCATTCAAGCTTAAATAGTATGCTTATCAACGAACTCTTATGTCATGGACTAAACAATCCAAATAACTTAAATCACGTTCAAGAGGATATCAGCCAGCAACAATTCTCGTATTACTCTACCTTAAGGAACCAAGATGTGATTTTAGAAGGTTCCAAACACCAGCTCCCATGTATAGCTGAGGATGAAAATCCAGGTTTGAAGAGTTGGTTCTCAAGGGATTTTCATGCTAGACATGCAGAAGAATCAAGGATGATTGTTCCTTTGGAGTGTAATGGAGGCGAATCTGGATCCATTGGATCAATAACATATGGGGATTTGCATTCATCGAATTTGTCTGTGAGTCCTACCTCAGGATCAAGCAGTGTTACAAGTTCACCTGCTCTCACTAATACTGTTGCCACTAATACTAAGAAAAGGTGGCTTGAAATGGTGGACCAGAATCAGAAGCAAATAGTTCATAGGAAATCCATAGATACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGCCAAGGAAGGAAAGGAAGGCAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCAGCAAGAGCTTATGATATGGCCGCACTCAAGTATTGGGGACCCTCCTCTCATATAAATTTCCCATTGGAAAATTATCAAAACGAACTTGAGGAAATGAAGAACATGACGAGACAAGAATATGTTGCTCATTTACGAAGGAAAAGCAGCGGATTCTCAAGAGGGGCCTCCATGTACAGAGGAGTAACAAGCAGGCACCACCAACATGGAAGGTGGCAAGCTCGAATTGGAAGGGTAGCCGGAAACAAAGATCTATATCTTGGAACCTTTAGTACCCAAGAGGAAGCAGCTGAAGCCTATGACATTGCTGCTATTAAATTCAGAGGAGTTAATGCTGTCACTAACTTTGATATAACAAGATATGACGTGGAAAAAATTATGGAGAGCAATAACCTTCTTAGCAGTGAACAAGCTAAGCGGAAAAGAGAGATGGATGATGGAACTAGAAGCGAGGCTACCGTTAACCAAAAACCTTCTACATATGACCACACTCAAGAAACCATTCTAATGCAGAAAAGATGCAAAAACCAATCAGAATGGAAGATGGTTCAGTTTCCATGCCCCCAACAGCTTGATCAGAATCAAAGAATCGAGAGTTGTAGAACTCAGCCCTTCTCAACGGACTTAGATAACATGTTTCGTCACCAAGTTGAGGAACGGAGCAACATGGGAACACACTTGTCAAATCCTTCTTCTCTGGTGACAAGTTTGAGTAGCTCAAGAGAAGAGAGCCCAGATAAGACAAGCATGCCAATGCTCTTTGGAATGCCTTCAACAGTGTCCAAATTATTGGCTAACGTGGATTCTTGGGATCTATCTTCCAATCTCAGGACTGCGCTTTCTATGCCTCAGATGCCAATTTTTGCTGCTTGGACAGATGCATAA 1842 0.4191 MKPIENGNTVSINYQNSWLGFSLSPQMNIGVPSHLHQTQPSSAAVEAVPPNFYHHTPLHNYGLYYELEGEHVGMSSSLPIMPLKSNASLSGIEALSRSQAQATTTISAMHSSLNSMLINELLCHGLNNPNNLNHVQEDISQQQFSYYSTLRNQDVILEGSKHQLPCIAEDENPGLKSWFSRDFHARHAEESRMIVPLECNGGESGSIGSITYGDLHSSNLSVSPTSGSSSVTSSPALTNTVATNTKKRWLEMVDQNQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQGRKGRQVYLGGYDMEEKAARAYDMAALKYWGPSSHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMESNNLLSSEQAKRKREMDDGTRSEATVNQKPSTYDHTQETILMQKRCKNQSEWKMVQFPCPQQLDQNQRIESCRTQPFSTDLDNMFRHQVEERSNMGTHLSNPSSLVTSLSSSREESPDKTSMPMLFGMPSTVSKLLANVDSWDLSSNLRTALSMPQMPIFAAWTDA* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1685 613 SUPERFAMILY DNA-binding domain 274 343 IPR016177 GO:0003677
Gso1g1685 613 CDD AP2 274 341 IPR001471 GO:0003700|GO:0006355
Gso1g1685 613 Pfam AP2 domain 275 333 IPR001471 GO:0003700|GO:0006355
Gso1g1685 613 Pfam AP2 domain 378 428 IPR001471 GO:0003700|GO:0006355
Gso1g1685 613 ProSiteProfiles AP2/ERF domain profile. 275 341 IPR001471 GO:0003700|GO:0006355
Gso1g1685 613 Coils Coil 342 362 - -
Gso1g1685 613 MobiDBLite consensus disorder prediction 453 481 - -
Gso1g1685 613 MobiDBLite consensus disorder prediction 219 238 - -
Gso1g1685 613 SUPERFAMILY DNA-binding domain 376 437 IPR016177 GO:0003677
Gso1g1685 613 MobiDBLite consensus disorder prediction 540 568 - -
Gso1g1685 613 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 150 611 - -
Gso1g1685 613 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 105 - -
Gso1g1685 613 MobiDBLite consensus disorder prediction 454 469 - -
Gso1g1685 613 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 14 105 - -
Gso1g1685 613 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 150 611 - -
Gso1g1685 613 MobiDBLite consensus disorder prediction 541 565 - -
Gso1g1685 613 ProSiteProfiles AP2/ERF domain profile. 377 436 IPR001471 GO:0003700|GO:0006355
Gso1g1685 613 PRINTS Ethylene responsive element binding protein signature 276 287 IPR001471 GO:0003700|GO:0006355
Gso1g1685 613 PRINTS Ethylene responsive element binding protein signature 418 438 IPR001471 GO:0003700|GO:0006355
Gso1g1685 613 SMART rav1_2 275 347 IPR001471 GO:0003700|GO:0006355
Gso1g1685 613 SMART rav1_2 377 442 IPR001471 GO:0003700|GO:0006355
Gso1g1685 613 CDD AP2 376 438 IPR001471 GO:0003700|GO:0006355
Gso1g1685 613 Gene3D AP2/ERF domain 274 343 IPR036955 GO:0003700|GO:0006355
Gso1g1685 613 Gene3D AP2/ERF domain 377 438 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1685 Gso-Chr1 53499060 53502719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1685 48 613 AP2-EREBP Transcription Factor Family AT4G37750 44.884 3.15e-138 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gso1g1685 AP2 5.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1685 K09285 - gmx:100812275 1201.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1685 1 53499060 53502719 Gso11g0394 11 3446104 3449912 GST
Gso1g1685 1 53499060 53502719 Gso5g0936 5 30659891 30664295 PCT
Gso1g1685 1 53499060 53502719 Gso17g1333 17 13574921 13579702 PCT
Gso5g0936 5 30659891 30664295 Gso1g1685 1 53499060 53502719 PCT
Gso17g1333 17 13574921 13579702 Gso1g1685 1 53499060 53502719 PCT