Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1684 ATGCTTTCTGCTATTTCTTTTCAGGGAAACCCATTCCCGGCGTTGGAATACGGTTTCACGCCTTGGGATGGGCTTCACTCTTTGGGCTTCAAGCCCACCAGCCCCGACCCCAACCACGTCACTTCGAGTTCCGGTTCAGACGACCCAAACCGAGCCCATGCCGAAGAAAAACTGGCCTCGGACGAGTCGAACCGCGTTGCATCCATCATGGAGGAGCGAAAACGGAGGCGAATGATATCGAACCGGGAATCTGCCCGAAGGTCACGCGTGCGTAAACAAAGACACCTAGAGAACTTACGGAATCAGGTGAACCTATTTAGGGTTGAAAACCGGGAACTGAACAATGGGTTGCAGTTTCTCCTTCACCACGGTAACCGCTTGCGAACCGAAAACGAGTGGCTCCGGTCCGAACGAGCCCTGCTCCGTCAAAAACTGGCCAACATAAATCAACTTTTGCTTTTCCAACAATTGCAAGCATTTTCCTCTGCATGGCCCTGCAATATTGTCATGGCGGAATAA 519 0.5183 MLSAISFQGNPFPALEYGFTPWDGLHSLGFKPTSPDPNHVTSSSGSDDPNRAHAEEKLASDESNRVASIMEERKRRRMISNRESARRSRVRKQRHLENLRNQVNLFRVENRELNNGLQFLLHHGNRLRTENEWLRSERALLRQKLANINQLLLFQQLQAFSSAWPCNIVMAE* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1684 172 CDD bZIP_plant_GBF1 74 123 IPR045314 GO:0003700|GO:0006355
Gso1g1684 172 Gene3D - 71 124 - -
Gso1g1684 172 MobiDBLite consensus disorder prediction 49 86 - -
Gso1g1684 172 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 71 134 IPR004827 GO:0003700|GO:0006355
Gso1g1684 172 PANTHER BZIP TRANSCRIPTION FACTOR 44 19 172 - -
Gso1g1684 172 SUPERFAMILY Leucine zipper domain 73 122 IPR046347 GO:0003700|GO:0006355
Gso1g1684 172 Coils Coil 82 116 - -
Gso1g1684 172 Pfam bZIP transcription factor 73 131 IPR004827 GO:0003700|GO:0006355
Gso1g1684 172 SMART brlzneu 69 133 IPR004827 GO:0003700|GO:0006355
Gso1g1684 172 MobiDBLite consensus disorder prediction 30 91 - -
Gso1g1684 172 MobiDBLite consensus disorder prediction 34 48 - -
Gso1g1684 172 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 76 91 IPR004827 GO:0003700|GO:0006355
Gso1g1684 172 PANTHER BZIP TRANSCRIPTION FACTOR 19 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1684 Gso-Chr1 53489441 53490277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1684 1 156 bZIP Transcription Factor Family AT3G49760 39.394 1.24e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso1g1684 bZIP_1 6.2e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1684 - - gmx:102667230 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1684 1 53489441 53490277 Gso11g0395 11 3466020 3466703 GST
Gso1g1684 1 53489441 53490277 Gso5g0934 5 30590434 30591370 PCT
Gso1g1684 1 53489441 53490277 Gso17g1337 17 13649383 13650219 PCT
Gso5g0934 5 30590434 30591370 Gso1g1684 1 53489441 53490277 PCT
Gso17g1337 17 13649383 13650219 Gso1g1684 1 53489441 53490277 PCT