Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1673 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAGGAAGAAGCAGCATTGAAAGCTGGAGTAGTCAAACACGGGGCTGGAAAATGGCGCACCATACTTACTGACCCAGAGTTCAGTTCCATTTTGCGCATGCGTTCAAATGTAGATCTCAAGGACAAATGGAGGAACATAAATGTGACAGCAATATGGGGATCAAGGCAGAAAGCAAAGCTTGCTCTTAAAAAGAACCTACTACCATCCACCAAAATCGACAATAACCACATGGCCTTGAGTACTGTAGTTCAACGTGACAAAGAAGTTGCAAATCCCAAGCCTTTGGCAGTTTCTAGTGGGACATCTCCTAATTCAAAGGAAAAAATATCGAAGCTACAGAACTTCCAGTTGGATAATCTTATATTAGAGTCCATTATCAAGTTGAAGGAGCCAAGGGGTTCTGACCAGGCAGCAATTGCTGCATATATAGAGGATCAATACTGTTCTACGCCGACCCTCAGAAAGTTACTGTCAACAAAACTGAAGCACATGGTGGCTAGTGGAAAATTAATGAAGGTAAAGCATAAGTACAGGATTGCAACAAATTTAACAATATCTGAGAAAAGAAGATGCTCTTCCCTGTTACTCCTGGAAGGGAGGCCCAAAGATTCTCCAAAAGCAGAGAAGACTGGTGTCAACATCCTTTCAAAATCCGAAATTGATGCAGAGCTATCGAAAATGAAGGGTGTGACACCTCAAGAGGCTGCGGCGGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGCTGCCATTGCCGAGGCTGAGGCAGCAGCTAGGGAGGCAGATGCTGCAGAAGCCGAGGCAGAGGCTGCACGAGTGTTTGCAAAAGCAGCAATGAAAGCACTAAAATGCAAGACACTTCGTATTTGA 897 0.4493 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSSILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLLPSTKIDNNHMALSTVVQRDKEVANPKPLAVSSGTSPNSKEKISKLQNFQLDNLILESIIKLKEPRGSDQAAIAAYIEDQYCSTPTLRKLLSTKLKHMVASGKLMKVKHKYRIATNLTISEKRRCSSLLLLEGRPKDSPKAEKTGVNILSKSEIDAELSKMKGVTPQEAAAAAAKAVAEAEAAIAEAEAAAREADAAEAEAEAARVFAKAAMKALKCKTLRI* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1673 298 CDD SANT_TRF 6 57 - -
Gso1g1673 298 Gene3D - 120 221 IPR036388 -
Gso1g1673 298 SUPERFAMILY "Winged helix" DNA-binding domain 121 200 IPR036390 -
Gso1g1673 298 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 115 191 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso1g1673 298 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Gso1g1673 298 SMART h15plus2 121 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso1g1673 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Gso1g1673 298 PANTHER SINGLE MYB HISTONE 4 1 298 IPR044597 GO:0003691
Gso1g1673 298 Coils Coil 246 280 - -
Gso1g1673 298 Pfam linker histone H1 and H5 family 128 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso1g1673 298 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Gso1g1673 298 PANTHER MYB TRANSCRIPTION FACTOR 1 298 - -
Gso1g1673 298 Gene3D - 2 59 - -
Gso1g1673 298 SUPERFAMILY Homeodomain-like 2 68 IPR009057 -
Gso1g1673 298 SMART sant 4 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1673 Gso-Chr1 53383980 53391251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1673 1 294 Single Myb Histone (SMH) Gene Family AT5G67580 55.405 1.00e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso1g1673 Linker_histone 2.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1673 K09422 - gmx:778165 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1673 1 53383980 53391251 Gso11g0407 11 3568262 3572356 GST
Gso1g1673 1 53383980 53391251 Gso5g0920 5 30003197 30011097 PCT
Gso1g1673 1 53383980 53391251 Gso17g1352 17 13914887 13924416 PCT
Gso5g0920 5 30003197 30011097 Gso1g1673 1 53383980 53391251 PCT
Gso17g1352 17 13914887 13924416 Gso1g1673 1 53383980 53391251 PCT