Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1670 ATGGATACCACGTTGTTTAGGGTAGTGAGTAGTTTCCAACACCAACACCAACCCGATCACGATCAATCCCTCAACAACTCCACCACAAGCAGCAGCTCTCGATCCTCCAGACAACAACAAAACTATCCCTACCCACAAGAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACCTATCCTCGTCTTCTTCCAAGCACTATTGTCCCTATCAACCCCACCCTCCCTCCACTACCACCATCCACCACTCCTTCTCCCCCACTCCCTGCGACTTTGAATTCTCCGGCAAGTGGGCCCAGGACATCCTCCTCGAAACCGCACGGGCCGTGGCCGACAAGAACACCACGCGCCTCCAACAACTCATGTGGATGCTAAACGAGCTAAGCTCCCCCTACGGCGACACCGACCAGAAACTGGCCTCGTACTTCCTCCAAGCCTTCTTCAGCCGCATCTCCCAAGCCGGGGACCGAACCTACCGAACCTTAGCTTCGGCCTCGGAGAAAACATGCTCCTTCGAATCGACCCGCAAGACGGTGCTCAAGTTCCAGGAGGTGAGTCCCTGGACAACCTTCGGCCACGTGGCGTCCAATGGCGCCATCTTGGAAGCCTTGGAAGGCGAGCCCAAACTACACATAATTGACATCAGCAACACCTATTGCACCCAATGGCCAACCCTCTTCGAAGCCTTGGCCACTCGAAATGACGACACTCCGCACCTCCGTTTAACCTCCGTCGTCACCGCTGACGCCACCGCTCAGAAACTCATGAAGGAAATCGGCGCCAGAATGGAGAAATTCGCCAGACTCATGGGCGTGCCCTTTAAATTCAACGTCGTTCATCACGTAGGTCAACTCTCTGACTTGGATTTCAGCATGTTGGACATTAAAGAAGACGAGGCCTTGGCGATTAACTGCGTCAACACCTTGCATTCGATCGCCGCCGTGGGGAACCACCGTGACGCGGTGATATCTTCCTTGAGGAGGTTGAAACCGAGGATCGTCACGCTGGTGGAGGAGGAGGCTGATTTGGACGTGGGATTGGAGGGGTTTGAGTTTGTGAAAGGGTTCGAAGAGTGTTTGAGGTGGTTTAGGGTTTACTTTGAGGCGTTGGACGAGAGTTTTCCGCGGACGAGCAACGAGAGGTTGTTGCTGGAGAGGGCGGCGGGGAAGGCGGTGGTGGACCTAGTGGCGTGTTCGGCGGCGGAGTCGGTGGAGCGGCGAGAGACGGCGGCGCGGTGGGCGAGGAGGATGCATGGAGGGGGGTTAAATACGGTGGCGTTTAGCGAAGAGGTTTGCGATGATGTGAAGGCGTTGCTGAGGAGGTATAGGGAGGGGTGGGCAATGACACAGTGCTCCGACGCCGGAATATTCCTGACGTGGAAGGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGGGCCTTGACGTAG 1431 0.5584 MDTTLFRVVSSFQHQHQPDHDQSLNNSTTSSSSRSSRQQQNYPYPQEDEECFNFFMDEEDLSSSSSKHYCPYQPHPPSTTTIHHSFSPTPCDFEFSGKWAQDILLETARAVADKNTTRLQQLMWMLNELSSPYGDTDQKLASYFLQAFFSRISQAGDRTYRTLASASEKTCSFESTRKTVLKFQEVSPWTTFGHVASNGAILEALEGEPKLHIIDISNTYCTQWPTLFEALATRNDDTPHLRLTSVVTADATAQKLMKEIGARMEKFARLMGVPFKFNVVHHVGQLSDLDFSMLDIKEDEALAINCVNTLHSIAAVGNHRDAVISSLRRLKPRIVTLVEEEADLDVGLEGFEFVKGFEECLRWFRVYFEALDESFPRTSNERLLLERAAGKAVVDLVACSAAESVERRETAARWARRMHGGGLNTVAFSEEVCDDVKALLRRYREGWAMTQCSDAGIFLTWKEQPVVWASAWRALT* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1670 476 MobiDBLite consensus disorder prediction 9 43 - -
Gso1g1670 476 PANTHER PROTEIN SHORT-ROOT 1 473 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Gso1g1670 476 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 473 IPR005202 -
Gso1g1670 476 Pfam GRAS domain family 102 473 IPR005202 -
Gso1g1670 476 ProSiteProfiles GRAS family profile. 91 473 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1670 Gso-Chr1 53360702 53363012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1670 41 473 GRAS Transcription Factor Family AT4G37650 63.395 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso1g1670 GRAS 6.4e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1670 - - gmx:100820459 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1670 1 53360702 53363012 Gso11g0411 11 3594334 3596435 GST
Gso1g1670 1 53360702 53363012 Gso5g0914 5 29886947 29888963 PCT
Gso1g1670 1 53360702 53363012 Gso17g1355 17 13951192 13953114 PCT
Gso5g0914 5 29886947 29888963 Gso1g1670 1 53360702 53363012 PCT
Gso17g1355 17 13951192 13953114 Gso1g1670 1 53360702 53363012 PCT