Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1669 ATGGGGAAGAAGCAGCACAGCAAAGACAGAATGTTCATCACCAAAACGGAGTGGGCAACGGAGTGGGGAGGCGCTAAATCCAAAGAAAATCGCACTCCCTTCAAACGTCTTCCCTTCTATTGCTGCTCGCTTACGTTTACGCCGTTTGAAGAACCGGTCTGCACACCTGATGGCAGTGTTTTCGATAATATGAATATAACTCCCTATATTGTAAAATATGGCAAACATCCAGTCAATGGAGCTCCTCTCAAGCATCAGGATCTCATTCCACTAACTTTCCACAAGAATTCAGAAGGAGAATATCATTGTCCAGTGCTAAACAAAGTTTTCACTGAATTTACACATATTGTGGCAGTGAAGACCACAGGAAACGTGTTCTGCTATGAGGCTGTTAAAGAGTTAAACATTAAGACAAAAAACTGGAAGGAGCTCCTCACTGATGAGCCATTCACTAAGGATGACCTTATAACCATTCAAAATCCTAATGCACTTGACAGCAAGGTTCTTCTGGATTTTGATCATGTTAAAAATAGTTTGAAAGTTGATGATGAAGAACTACAGAAAATGAGTTCAGATCCAACCTATAATATAAACATGTCGGGTGATATAAAGCAAATGCTTAAGGAGCTTGGAACTGAGAAAGGGAAGGAAACTGCATTGCATGGGGGAGGCGGTGGCAAGGCACAAAAAGAAAGGGCTGCTGCACTTGCTGCCATCTTAGCTGCAAGGTCACGTGTTGAAGAAGATTCCAAATCAAATCCAAATAAAGAGGCCAAAGCTCCTCAGGCATTTAGTGTTGTTGATGCTGCATCTGCTTCAGTACATGGAAGAAGTGCAGCTGCTGCTAAAGCCTCAGCAGGTGATAAAACTGCAGCTAGAATAGCTATGCATGTGGCTGGTGACAGGGCACCAGTGAATGCAAAGATGGTAAAAAGCCGTTTCACGACTGGTGCTGCTTCCCGGTCTTTCACTTCAACATCATTTGATCCAGTTACAAAAAATGAATTTGAGTATGTGAAAGTTGAGAAGAATCCAAAAAAGAAGGGATATGTACAACTGCATACAACACATGGTGATTTGAACATTGAGCTGCATTGTGATATAACCCCCAGGGCATGCGAGAACTTCATCACTCTTTGTGAACGTGGATATTATAATGGAGTTGCTTTTCATAGAAACATTAGGAATTTTATGATACAGGGTGGTGATCCTACTGGTACCGGTCGAGGAGGTGAATCTATATGGGGAAAGCCTTTTAAAGATGAACTCAACTCCAAATTAATTCACTCCGGAAGGGGTGTGGTAAGCATGGCAAACAGTGGCCCACACACTAATGGTTCCCAGTTTTTCATCTTGTACAAGTCTGCAAATCATCTAAACTTCAAACATACAGTTTTTGGAGGAGTTGTGGGTGGCTTGACTACCCTAGCGGCAATGGAAAAGGTTCCTGTTGATGATGATGACCGGCCTCTGGAGGAAATCAAGATAACAAGTGTCACGATTTTTGTCAATCCTTACACAGAACCAGATGAGGGAGAAGAGCAGGATAATGCCAAAGAGAAGAATGCAGAGGATGAAGATAATGATAAGGTAGGCTCATGGTATAGCAATCCTGGCGCTGCAACGTCTGTTTCTGGAGGTACGGGGGCTGGTGGTGGCGTTGGCAAGTACTTAAAAGCTAGGAGCACTCAAGCTAAATCTGCTACTGTTGACAACACCGGTACAGACGTTGTAGTAAAGAAAAGAAAAGTGGGAGTTGCCAGCAGTGAATTTAAAGATTTTTCTGCATGGTAA 1794 0.4281 MGKKQHSKDRMFITKTEWATEWGGAKSKENRTPFKRLPFYCCSLTFTPFEEPVCTPDGSVFDNMNITPYIVKYGKHPVNGAPLKHQDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEPFTKDDLITIQNPNALDSKVLLDFDHVKNSLKVDDEELQKMSSDPTYNINMSGDIKQMLKELGTEKGKETALHGGGGGKAQKERAAALAAILAARSRVEEDSKSNPNKEAKAPQAFSVVDAASASVHGRSAAAAKASAGDKTAARIAMHVAGDRAPVNAKMVKSRFTTGAASRSFTSTSFDPVTKNEFEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRACENFITLCERGYYNGVAFHRNIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLIHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLAAMEKVPVDDDDRPLEEIKITSVTIFVNPYTEPDEGEEQDNAKEKNAEDEDNDKVGSWYSNPGAATSVSGGTGAGGGVGKYLKARSTQAKSATVDNTGTDVVVKKRKVGVASSEFKDFSAW* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1669 597 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Gso1g1669 597 MobiDBLite consensus disorder prediction 505 550 - -
Gso1g1669 597 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 595 IPR044666 -
Gso1g1669 597 CDD cyclophilin_RING 350 508 - -
Gso1g1669 597 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Gso1g1669 597 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755|GO:0006457
Gso1g1669 597 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413|GO:0003755
Gso1g1669 597 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 500 IPR002130 GO:0000413|GO:0003755
Gso1g1669 597 SUPERFAMILY RING/U-box 37 104 - -
Gso1g1669 597 Pfam U-box domain 39 90 IPR003613 GO:0004842|GO:0016567
Gso1g1669 597 SUPERFAMILY Cyclophilin-like 350 508 IPR029000 -
Gso1g1669 597 Gene3D - 331 514 IPR029000 -
Gso1g1669 597 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Gso1g1669 597 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Gso1g1669 597 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Gso1g1669 597 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Gso1g1669 597 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
Gso1g1669 597 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 595 - -
Gso1g1669 597 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Gso1g1669 597 MobiDBLite consensus disorder prediction 512 531 - -
Gso1g1669 597 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1669 Gso-Chr1 53352328 53357054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1669 1 597 U-box Gene Family AT5G67530 76.080 0.0 920
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1669 K10598 - gmx:100819923 1138.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1669 1 53352328 53357054 Gso11g0412 11 3601215 3606171 GST