Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso1g1657 ATGAGTTGCAACGGGTGCCGCGTCCTTCGAAAGGGTTGCAGCGAGTCTTGTATCCTGCGGCCGTGTCTACAGTGGATCGATACGCCCGAAGCACAAGGCCATGCCACTGTCTTCGTTGCCAAATTCTTTGGCCGTGCCGACCTCATGTCCTTCATTTCCAACGTCCCTGAACCCCAAAGGCCCGCTCTGTTTCAATCTCTGTTGTTCGAAGCGTGTGGAAGAACGGTGAACCCTGTCAACGGTGCTGTTGGGCTTTTATGGACCGGAAACTGGCACGTGTGCCAGGCGGCGGTTGAGACGGTGCTCCGCGGCGGCACCGTCAGGCCCATGCCGGAGCTTCTCGGCCTAGACGCTCCCACTCCCACTGCCGATGACGCTTCCGAAGGGGAAGTTACCTGTACCGACAAGTGGAGAGTCCGAGATCCGAACCCGAATTTCCCGGGAACCCGGTTCCCGGGTTCGAGGTCCGATAAGGCCGGTTCTGGTGGCAAACGCAAGCGATTTGAAGAGCTCGCCAAGCTTCAGACGGCGACGACGGATCTCAATCTCCGGCTGACGCCGAGTTTTCTGCAGAACGCGGCTAGCTACGGCTGCCGGCAGGAAATTCGCTGGCCAGGGTCGCCGTCAATGAATTCCGAGGAGTCCGGGACGACGACGGCGTGCTTGGAGAGCGGGATCGGAGATCACTACGCTCACGACGGAGACCGGAAAGTGCTGAACCTTTTCATTTGA 732 0.5915 MSCNGCRVLRKGCSESCILRPCLQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTVRPMPELLGLDAPTPTADDASEGEVTCTDKWRVRDPNPNFPGTRFPGSRSDKAGSGGKRKRFEELAKLQTATTDLNLRLTPSFLQNAASYGCRQEIRWPGSPSMNSEESGTTTACLESGIGDHYAHDGDRKVLNLFI* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso1g1657 243 MobiDBLite consensus disorder prediction 137 165 - -
Gso1g1657 243 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Gso1g1657 243 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 243 - -
Gso1g1657 243 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 243 - -
Gso1g1657 243 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso1g1657 Gso-Chr1 53209443 53210815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso1g1657 1 242 AS2 family AT3G49940 54.475 1.52e-82 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso1g1657 LOB 7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso1g1657 - - gmx:100816189 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1657 1 53209443 53210815 Gso11g0423 11 3735530 3736814 GST
Gso1g1657 1 53209443 53210815 Gso20g1059 20 40314817 40316626 PCT
Gso1g1657 1 53209443 53210815 Gso10g2296 10 50026418 50027943 PCT
Gso17g1367 17 14148522 14149962 Gso1g1657 1 53209443 53210815 PCT